(8 nodes) Alcohol dehydrogenase, zinc-type, conserved site network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22428.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AJR26563.1	L-iditol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	AJR25037.1	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	AJR26447.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AJR23864.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AJR23624.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	AJR23426.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (370 aa)
	AJR23332.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22428.1	AJR25037.1	TZ53_00120	TZ53_16210	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AJR22428.1	AJR26447.1	TZ53_00120	TZ53_16075	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR22428.1	AJR26563.1	TZ53_00120	TZ53_21605	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-iditol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AJR23332.1	AJR23426.1	TZ53_05785	TZ53_06485	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.425
AJR23332.1	AJR26447.1	TZ53_05785	TZ53_16075	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AJR23426.1	AJR23332.1	TZ53_06485	TZ53_05785	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AJR23426.1	AJR25037.1	TZ53_06485	TZ53_16210	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
AJR23426.1	AJR26447.1	TZ53_06485	TZ53_16075	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AJR23624.1	AJR25037.1	TZ53_07740	TZ53_16210	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AJR23624.1	AJR26447.1	TZ53_07740	TZ53_16075	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
AJR23864.1	AJR25037.1	TZ53_09130	TZ53_16210	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AJR23864.1	AJR26447.1	TZ53_09130	TZ53_16075	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJR25037.1	AJR22428.1	TZ53_16210	TZ53_00120	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AJR25037.1	AJR23426.1	TZ53_16210	TZ53_06485	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.954
AJR25037.1	AJR23624.1	TZ53_16210	TZ53_07740	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
AJR25037.1	AJR23864.1	TZ53_16210	TZ53_09130	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AJR25037.1	AJR26447.1	TZ53_16210	TZ53_16075	Zinc-binding dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJR26447.1	AJR22428.1	TZ53_16075	TZ53_00120	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR26447.1	AJR23332.1	TZ53_16075	TZ53_05785	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AJR26447.1	AJR23426.1	TZ53_16075	TZ53_06485	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.958