(5 nodes) Uracil-DNA glycosylase-like network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR24328.1	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	ung	uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (231 aa)
	AJR25199.1	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AJR26509.1	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	AJR25586.1	2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR24328.1	AJR25199.1	TZ53_11910	TZ53_17150	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR24328.1	AJR26509.1	TZ53_11910	TZ53_19185	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR25199.1	AJR24328.1	TZ53_17150	TZ53_11910	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR25199.1	AJR26509.1	TZ53_17150	TZ53_19185	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJR26509.1	AJR24328.1	TZ53_19185	TZ53_11910	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AJR26509.1	AJR25199.1	TZ53_19185	TZ53_17150	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927