(13 nodes) TonB-dependent receptor, conserved site network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23154.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (921 aa)
	AJR23260.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (774 aa)
	AJR23420.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (711 aa)
	AJR23563.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (746 aa)
	AJR23575.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (743 aa)
	AJR23612.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (968 aa)
	AJR23750.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (767 aa)
	AJR23778.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (730 aa)
	AJR23951.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (962 aa)
	AJR23967.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (989 aa)
	AJR23978.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (777 aa)
	AJR25015.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (780 aa)
	AJR25420.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23154.1	AJR23612.1	TZ53_04605	TZ53_07675	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
AJR23154.1	AJR23951.1	TZ53_04605	TZ53_09665	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
AJR23154.1	AJR23967.1	TZ53_04605	TZ53_09780	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AJR23260.1	AJR23612.1	TZ53_05285	TZ53_07675	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
AJR23260.1	AJR23951.1	TZ53_05285	TZ53_09665	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AJR23260.1	AJR23967.1	TZ53_05285	TZ53_09780	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AJR23420.1	AJR23612.1	TZ53_06440	TZ53_07675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
AJR23420.1	AJR23951.1	TZ53_06440	TZ53_09665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJR23420.1	AJR23967.1	TZ53_06440	TZ53_09780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
AJR23563.1	AJR23612.1	TZ53_07365	TZ53_07675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AJR23563.1	AJR23951.1	TZ53_07365	TZ53_09665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AJR23563.1	AJR23967.1	TZ53_07365	TZ53_09780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
AJR23575.1	AJR23612.1	TZ53_07460	TZ53_07675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AJR23575.1	AJR23951.1	TZ53_07460	TZ53_09665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AJR23575.1	AJR23967.1	TZ53_07460	TZ53_09780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AJR23612.1	AJR23154.1	TZ53_07675	TZ53_04605	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
AJR23612.1	AJR23260.1	TZ53_07675	TZ53_05285	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
AJR23612.1	AJR23420.1	TZ53_07675	TZ53_06440	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
AJR23612.1	AJR23563.1	TZ53_07675	TZ53_07365	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AJR23612.1	AJR23575.1	TZ53_07675	TZ53_07460	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651