(5 nodes) Secretin/TonB, short N-terminal domain network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22757.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (856 aa)
	AJR23821.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (942 aa)
	AJR26390.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
	AJR25168.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (815 aa)
	AJR25283.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (856 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22757.1	AJR25168.1	TZ53_02185	TZ53_16970	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AJR22757.1	AJR26390.1	TZ53_02185	TZ53_14100	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AJR23821.1	AJR26390.1	TZ53_08890	TZ53_14100	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
AJR25168.1	AJR22757.1	TZ53_16970	TZ53_02185	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AJR25168.1	AJR25283.1	TZ53_16970	TZ53_17675	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AJR25283.1	AJR25168.1	TZ53_17675	TZ53_16970	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AJR26390.1	AJR22757.1	TZ53_14100	TZ53_02185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AJR26390.1	AJR23821.1	TZ53_14100	TZ53_08890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493