9 items (Sphingobium sp. YBL2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rsmI	16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (280 aa)
	AJR22613.1	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family. (260 aa)
	AJR22624.1	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AJR23466.1	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AJR23467.1	Catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AJR23469.1	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
	AJR23471.1	Precorrin-4 C11-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family. (260 aa)
	AJR23473.1	Precorrin 6A synthase; Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A. (251 aa)
	AJR24962.1	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22613.1	AJR22624.1	TZ53_01235	TZ53_01305	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AJR22613.1	AJR23466.1	TZ53_01235	TZ53_06725	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
AJR22613.1	AJR23469.1	TZ53_01235	TZ53_06740	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AJR22613.1	AJR23471.1	TZ53_01235	TZ53_06750	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	Precorrin-4 C11-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	0.493
AJR22613.1	AJR24962.1	TZ53_01235	TZ53_15745	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJR22624.1	AJR22613.1	TZ53_01305	TZ53_01235	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	0.980
AJR22624.1	AJR23466.1	TZ53_01305	TZ53_06725	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR22624.1	AJR23467.1	TZ53_01305	TZ53_06730	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
AJR22624.1	AJR23469.1	TZ53_01305	TZ53_06740	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJR22624.1	AJR23471.1	TZ53_01305	TZ53_06750	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Precorrin-4 C11-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	0.577
AJR22624.1	AJR23473.1	TZ53_01305	TZ53_06760	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Precorrin 6A synthase; Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.	0.543
AJR22624.1	AJR24962.1	TZ53_01305	TZ53_15745	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR23466.1	AJR22613.1	TZ53_06725	TZ53_01235	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	0.918
AJR23466.1	AJR22624.1	TZ53_06725	TZ53_01305	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR23466.1	AJR23467.1	TZ53_06725	TZ53_06730	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR23466.1	AJR23469.1	TZ53_06725	TZ53_06740	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJR23466.1	AJR23471.1	TZ53_06725	TZ53_06750	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Precorrin-4 C11-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.	0.951
AJR23466.1	AJR23473.1	TZ53_06725	TZ53_06760	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Precorrin 6A synthase; Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.	0.815
AJR23466.1	AJR24962.1	TZ53_06725	TZ53_15745	Catalyzes the formation of precorrin-3 from precorrin-2; Derived by automated computational analysis using gene prediction method: Protein Homology.	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AJR23467.1	AJR22624.1	TZ53_06730	TZ53_01305	Catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643