(13 nodes) Rieske [2Fe-2S] iron-sulphur domain network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR23298.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	AJR25427.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJR25385.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	AJR25365.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AJR24677.1	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	AJR23882.1	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	AJR23839.1	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	AJR23665.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	AJR23662.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AJR23660.1	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	AJR23289.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AJR22782.1	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (193 aa)
	AJR26081.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23298.1	AJR25427.1	TZ53_05535	TZ53_18500	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AJR23662.1	AJR23665.1	TZ53_07995	TZ53_08010	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AJR23665.1	AJR23662.1	TZ53_08010	TZ53_07995	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AJR23665.1	AJR25385.1	TZ53_08010	TZ53_18280	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AJR23839.1	AJR25385.1	TZ53_08990	TZ53_18280	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AJR25365.1	AJR25427.1	TZ53_18175	TZ53_18500	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AJR25385.1	AJR23665.1	TZ53_18280	TZ53_08010	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AJR25385.1	AJR23839.1	TZ53_18280	TZ53_08990	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AJR25385.1	AJR25427.1	TZ53_18280	TZ53_18500	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
AJR25427.1	AJR23298.1	TZ53_18500	TZ53_05535	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AJR25427.1	AJR25365.1	TZ53_18500	TZ53_18175	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AJR25427.1	AJR25385.1	TZ53_18500	TZ53_18280	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539