(37 nodes) ClpP/crotonase-like domain superfamily network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22634.1	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S41A family. (449 aa)
	AJR22995.1	Peptidase S14; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	AJR23062.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AJR23083.1	Crotonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
	AJR23087.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (689 aa)
	AJR23273.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AJR23278.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AJR23287.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AJR26189.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)
	AJR23299.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AJR23321.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AJR23322.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (269 aa)
	AJR23330.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AJR23570.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (680 aa)
	AJR26250.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (270 aa)
	AJR23596.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	AJR23894.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (695 aa)
	AJR24183.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa)
	AJR24554.1	Peptidase S14; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family. (719 aa)
	AJR24680.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AJR24816.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (253 aa)
	accA	acetyl-CoA carboxylase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (314 aa)
	AJR24856.1	methylcrotonoyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
	AJR24969.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AJR26442.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (268 aa)
	AJR25178.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa)
	AJR25181.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	AJR25188.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (691 aa)
	accD	acetyl-CoA carboxyl transferase; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (283 aa)
	AJR25410.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (722 aa)
	AJR25514.1	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
	clpP	Clp protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (211 aa)
	AJR25670.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	AJR25672.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
	AJR25677.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (725 aa)
	AJR25728.1	Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
	AJR25767.1	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR23062.1	AJR23083.1	TZ53_04080	TZ53_04185	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Crotonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.521
AJR23062.1	AJR23087.1	TZ53_04080	TZ53_04205	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.504
AJR23062.1	AJR23273.1	TZ53_04080	TZ53_05380	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AJR23062.1	AJR23287.1	TZ53_04080	TZ53_05475	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AJR23062.1	AJR23299.1	TZ53_04080	TZ53_05550	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AJR23062.1	AJR23321.1	TZ53_04080	TZ53_05690	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
AJR23062.1	AJR23322.1	TZ53_04080	TZ53_05705	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.720
AJR23062.1	AJR23330.1	TZ53_04080	TZ53_05770	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
AJR23062.1	AJR23596.1	TZ53_04080	TZ53_07590	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.846
AJR23062.1	AJR24680.1	TZ53_04080	TZ53_14025	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AJR23062.1	AJR24816.1	TZ53_04080	TZ53_14885	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.525
AJR23062.1	AJR24969.1	TZ53_04080	TZ53_15785	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AJR23062.1	AJR25670.1	TZ53_04080	TZ53_19930	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AJR23062.1	AJR25672.1	TZ53_04080	TZ53_19940	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.820
AJR23062.1	AJR25767.1	TZ53_04080	TZ53_20485	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
AJR23083.1	AJR23062.1	TZ53_04185	TZ53_04080	Crotonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AJR23083.1	AJR23087.1	TZ53_04185	TZ53_04205	Crotonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.945
AJR23083.1	AJR23273.1	TZ53_04185	TZ53_05380	Crotonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AJR23083.1	AJR23278.1	TZ53_04185	TZ53_05410	Crotonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AJR23083.1	AJR23299.1	TZ53_04185	TZ53_05550	Crotonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486