(7 nodes) SLBB domain network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR26532.1	NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (438 aa)
	AJR25599.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AJR22764.1	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	AJR23017.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	AJR23927.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AJR24924.1	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AJR25074.1	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22764.1	AJR23017.1	TZ53_02220	TZ53_03760	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJR22764.1	AJR23927.1	TZ53_02220	TZ53_09525	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJR22764.1	AJR24924.1	TZ53_02220	TZ53_15540	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJR22764.1	AJR25074.1	TZ53_02220	TZ53_16415	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJR22764.1	AJR25599.1	TZ53_02220	TZ53_19530	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJR23017.1	AJR22764.1	TZ53_03760	TZ53_02220	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJR23017.1	AJR23927.1	TZ53_03760	TZ53_09525	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AJR23017.1	AJR24924.1	TZ53_03760	TZ53_15540	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJR23017.1	AJR25074.1	TZ53_03760	TZ53_16415	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJR23017.1	AJR25599.1	TZ53_03760	TZ53_19530	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJR23927.1	AJR22764.1	TZ53_09525	TZ53_02220	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJR23927.1	AJR23017.1	TZ53_09525	TZ53_03760	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AJR23927.1	AJR24924.1	TZ53_09525	TZ53_15540	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJR23927.1	AJR25074.1	TZ53_09525	TZ53_16415	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AJR23927.1	AJR25599.1	TZ53_09525	TZ53_19530	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AJR24924.1	AJR22764.1	TZ53_15540	TZ53_02220	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJR24924.1	AJR23017.1	TZ53_15540	TZ53_03760	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJR24924.1	AJR23927.1	TZ53_15540	TZ53_09525	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJR24924.1	AJR25074.1	TZ53_15540	TZ53_16415	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AJR24924.1	AJR25599.1	TZ53_15540	TZ53_19530	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933