(37 nodes) Degradation of aromatic compounds network (Sphingobium sp. YBL2)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	AJR22433.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
	AJR23221.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	AJR23232.1	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	AJR26179.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AJR23259.1	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	AJR23308.1	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AJR23426.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (370 aa)
	AJR23592.1	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	AJR26262.1	3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AJR23654.1	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AJR23655.1	Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family. (96 aa)
	AJR23656.1	Muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (389 aa)
	AJR23665.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	AJR23667.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	AJR23842.1	Betaine-aldehyde dehydrogenase; Catalyzes the formation of betaine from betaine aldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	AJR26279.1	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AJR26280.1	4-oxalocrotonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AJR23843.1	4-oxalocrotonate tautomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 4-oxalocrotonate tautomerase family. (67 aa)
	AJR23844.1	Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (296 aa)
	AJR23845.1	4-hyroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (348 aa)
	AJR23850.1	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AJR23852.1	Toluene monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)
	AJR23853.1	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AJR23854.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
	AJR23855.1	Phenol 2-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AJR23856.1	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	AJR23857.1	Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	AJR23896.1	4-hyroxy-2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family. (340 aa)
	AJR23897.1	Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (313 aa)
	AJR23962.1	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AJR24685.1	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	AJR24991.1	Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 4-oxalocrotonate tautomerase family. (78 aa)
	AJR26447.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AJR26466.1	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AJR25338.1	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AJR25395.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AJR25444.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22433.1	AJR23665.1	TZ53_00150	TZ53_08010	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJR22433.1	AJR23667.1	TZ53_00150	TZ53_08020	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AJR23221.1	AJR23232.1	TZ53_05020	TZ53_05090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR23221.1	AJR23259.1	TZ53_05020	TZ53_05280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR23221.1	AJR23308.1	TZ53_05020	TZ53_05600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR23221.1	AJR23655.1	TZ53_05020	TZ53_07955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family.	0.900
AJR23221.1	AJR25338.1	TZ53_05020	TZ53_18020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AJR23221.1	AJR25444.1	TZ53_05020	TZ53_18605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AJR23221.1	AJR26179.1	TZ53_05020	TZ53_05105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AJR23221.1	AJR26262.1	TZ53_05020	TZ53_07930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJR23232.1	AJR23221.1	TZ53_05090	TZ53_05020	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR23232.1	AJR23259.1	TZ53_05090	TZ53_05280	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJR23232.1	AJR23308.1	TZ53_05090	TZ53_05600	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AJR23232.1	AJR23654.1	TZ53_05090	TZ53_07950	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AJR23232.1	AJR23655.1	TZ53_05090	TZ53_07955	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family.	0.908
AJR23232.1	AJR25444.1	TZ53_05090	TZ53_18605	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR23232.1	AJR26262.1	TZ53_05090	TZ53_07930	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJR23259.1	AJR23221.1	TZ53_05280	TZ53_05020	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR23259.1	AJR23232.1	TZ53_05280	TZ53_05090	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AJR23259.1	AJR23308.1	TZ53_05280	TZ53_05600	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901