(41 nodes) ABC transporters network (Sphingobium sp. YBL2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR22439.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	AJR22440.1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	AJR22598.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	AJR22606.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	AJR22639.1	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	AJR22640.1	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (464 aa)
	AJR22641.1	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	pstB	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (253 aa)
	AJR26097.1	Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AJR22761.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AJR22762.1	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AJR22763.1	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AJR23002.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
	AJR23180.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	AJR23181.1	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AJR26172.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	AJR23217.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AJR23819.1	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AJR23828.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	ssuB	Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (266 aa)
	AJR23833.1	Aliphatic sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	AJR26283.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	ftsE	Cell division protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. (236 aa)
	AJR24016.1	Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AJR24132.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	AJR24316.1	Molybdenum ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	AJR24317.1	Molybdate ABC transporter permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (232 aa)
	AJR24319.1	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AJR24636.1	Cytochrome C biogenesis protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. (215 aa)
	AJR24637.1	Cytochrome C biogenesis protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. (201 aa)
	AJR25008.1	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AJR25009.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	AJR25010.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AJR25011.1	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AJR25063.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)
	AJR25451.1	Bicarbonate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	AJR25452.1	Bicarbonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AJR25453.1	Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	lolD	ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (229 aa)
	AJR25547.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	ccmC	Heme ABC transporter permease; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. (240 aa)

Your Current Organism:

Sphingobium sp. YBL2

NCBI taxonomy Id: 484429
Other names: S. sp. YBL2

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR22439.1	AJR22440.1	TZ53_00180	TZ53_00185	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22439.1	AJR22606.1	TZ53_00180	TZ53_01200	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJR22439.1	AJR24132.1	TZ53_00180	TZ53_10725	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AJR22439.1	AJR26172.1	TZ53_00180	TZ53_04770	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AJR22440.1	AJR22439.1	TZ53_00185	TZ53_00180	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22440.1	AJR24132.1	TZ53_00185	TZ53_10725	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJR22440.1	AJR26172.1	TZ53_00185	TZ53_04770	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJR22606.1	AJR22439.1	TZ53_01200	TZ53_00180	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AJR22639.1	AJR22640.1	TZ53_01395	TZ53_01400	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.999
AJR22639.1	AJR22641.1	TZ53_01395	TZ53_01405	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22639.1	AJR24319.1	TZ53_01395	TZ53_11860	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJR22639.1	pstB	TZ53_01395	TZ53_01410	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.999
AJR22640.1	AJR22639.1	TZ53_01400	TZ53_01395	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22640.1	AJR22641.1	TZ53_01400	TZ53_01405	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22640.1	AJR24317.1	TZ53_01400	TZ53_11850	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Molybdate ABC transporter permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.489
AJR22640.1	AJR24319.1	TZ53_01400	TZ53_11860	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AJR22640.1	pstB	TZ53_01400	TZ53_01410	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.999
AJR22641.1	AJR22639.1	TZ53_01405	TZ53_01395	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJR22641.1	AJR22640.1	TZ53_01405	TZ53_01400	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.999
AJR22641.1	AJR24319.1	TZ53_01405	TZ53_11860	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411