STRINGSTRING
UFO1_1351 UFO1_1351 fumC fumC UFO1_0827 UFO1_0827 UFO1_0272 UFO1_0272 UFO1_3067 UFO1_3067 UFO1_3064 UFO1_3064 UFO1_3062 UFO1_3062 UFO1_1744 UFO1_1744 UFO1_1046 UFO1_1046
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UFO1_1351PFAM: FAD dependent oxidoreductase, BFD domain protein [2Fe-2S]-binding domain protein; KEGG: glycerol-3-phosphate dehydrogenase. (479 aa)
fumCFumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (461 aa)
UFO1_0827KEGG: aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain-containing protein. (640 aa)
UFO1_0272PFAM: protein of unknown function DUF1116, ATP-citrate lyase/succinyl-CoA ligase, CoA-binding domain protein; KEGG: succinyl-CoA-synthetase-like domain protein. (999 aa)
UFO1_3067KEGG: ansB, putative aspartate ammonia-lyase; PFAM: Lyase 1, N-terminal, Fumarase C. (467 aa)
UFO1_3064PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sdhC, hypothetical protein. (204 aa)
UFO1_3062TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: sdhB, putative succinate dehydrogenase iron-sulfur subunit; PFAM: Succinate dehydogenase/fumarate reductase N-terminal, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein. (252 aa)
UFO1_17443-isopropylmalate dehydratase; KEGG: aconitase A; PFAM: aconitate hydratase domain-containing protein. (798 aa)
UFO1_1046HAMAP : Fumarate hydratase class II; KEGG: aspartate ammonia-lyase; PFAM: Lyase 1, N-terminal, Fumarase C. (468 aa)
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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