STRINGSTRING
UFO1_2969 UFO1_2969 UFO1_0073 UFO1_0073 UFO1_0432 UFO1_0432 UFO1_0886 UFO1_0886 UFO1_1027 UFO1_1027 UFO1_1417 UFO1_1417 UFO1_1639 UFO1_1639
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UFO1_2969TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein; KEGG: multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein. (490 aa)
UFO1_0073PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, PAS fold-4 domain protein, histidine kinase A domain protein; KEGG: membrane signaling protein; SMART: ATP-binding region ATPase domain protein, PAS domain containing protein, histidine kinase A domain protein. (512 aa)
UFO1_0432TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein; KEGG: membrane signaling protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS domain containing protein. (480 aa)
UFO1_0886Signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, Cache domain protein, histidine kinase A domain protein, PAS fold-4 domain protein; KEGG: membrane signaling protein; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS domain containing protein. (775 aa)
UFO1_1027TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS fold-4 domain protein; KEGG: multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein, histidine kinase A domain protein, PAS domain containing protein, PAC repeat-containing protein. (677 aa)
UFO1_1417Putative sigma54 specific transcriptional regulator with PAS/PAC sensor; KEGG: PAS domain-containing protein; PFAM: sigma-54 factor interaction domain-containing protein, PAS fold-4 domain protein, amino acid-binding ACT domain-containing protein; SMART: AAA ATPase, PAS domain containing protein. (517 aa)
UFO1_1639PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein, helix-turn-helix Fis-type, PAS fold-4 domain protein; KEGG: PAS modulated Fis family sigma-54-specific transcriptional regulator; SMART: AAA ATPase. (497 aa)
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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