STRINGSTRING
UFO1_1046 UFO1_1046 fumC fumC UFO1_3067 UFO1_3067 argH argH UFO1_4538 UFO1_4538 UFO1_0711 UFO1_0711
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UFO1_1046HAMAP : Fumarate hydratase class II; KEGG: aspartate ammonia-lyase; PFAM: Lyase 1, N-terminal, Fumarase C. (468 aa)
fumCFumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (461 aa)
UFO1_3067KEGG: ansB, putative aspartate ammonia-lyase; PFAM: Lyase 1, N-terminal, Fumarase C. (467 aa)
argHPFAM: Lyase 1, N-terminal; TIGRFAM: argininosuccinate lyase; HAMAP : Argininosuccinate lyase; KEGG: argH, putative argininosuccinate lyase. (471 aa)
UFO1_4538TIGRFAM: adenylosuccinate lyase; PFAM: Lyase 1, N-terminal, Adenylosuccinate lyase; KEGG: adenylosuccinate lyase; SMART: Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (430 aa)
UFO1_0711SMART: Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; KEGG: adenylosuccinate lyase; PFAM: Lyase 1, N-terminal, Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (448 aa)
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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