STRINGSTRING
UFO1_0103 UFO1_0103 UFO1_0207 UFO1_0207 UFO1_0213 UFO1_0213 UFO1_0351 UFO1_0351 UFO1_0363 UFO1_0363 UFO1_0364 UFO1_0364 UFO1_0400 UFO1_0400 UFO1_0706 UFO1_0706 UFO1_0707 UFO1_0707 UFO1_0827 UFO1_0827 UFO1_0875 UFO1_0875 UFO1_0889 UFO1_0889 UFO1_0900 UFO1_0900 UFO1_1073 UFO1_1073 UFO1_1192 UFO1_1192 UFO1_1649 UFO1_1649 UFO1_1650 UFO1_1650 UFO1_1744 UFO1_1744 gcvT gcvT gcvH gcvH gcvPA gcvPA gcvPB gcvPB UFO1_2006 UFO1_2006 UFO1_2771 UFO1_2771 UFO1_2772 UFO1_2772 UFO1_2816 UFO1_2816 UFO1_2836 UFO1_2836 UFO1_2959 UFO1_2959 UFO1_2961 UFO1_2961 UFO1_2962 UFO1_2962 UFO1_3041 UFO1_3041 UFO1_3073 UFO1_3073 glmE glmE glmS-2 glmS-2 UFO1_3093 UFO1_3093 UFO1_3142 UFO1_3142 UFO1_3146 UFO1_3146 UFO1_3282 UFO1_3282 UFO1_3308 UFO1_3308 UFO1_3314 UFO1_3314 UFO1_3513 UFO1_3513 UFO1_3514 UFO1_3514 UFO1_3572 UFO1_3572 UFO1_3688 UFO1_3688 UFO1_3800 UFO1_3800 UFO1_3828 UFO1_3828 UFO1_4012 UFO1_4012 mdh mdh glyA glyA UFO1_4435 UFO1_4435 UFO1_4550 UFO1_4550 UFO1_4669 UFO1_4669
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UFO1_0103Glycerate dehydrogenase; KEGG: D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein. (324 aa)
UFO1_0207TIGRFAM: acetyl-CoA acetyltransferase; KEGG: atoB, acetyl-CoA acetyltransferase; PFAM: Thiolase domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
UFO1_0213TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: haloacid dehalogenase-like family hydrolase. (209 aa)
UFO1_0351Glyoxylate reductase; KEGG: lactate dehydrogenase-like oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein. (318 aa)
UFO1_0363KEGG: 2-dehydro-3-deoxyphosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase. (215 aa)
UFO1_0364KEGG: glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein. (322 aa)
UFO1_0400KEGG: aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. (482 aa)
UFO1_0706D-lactate dehydrogenase (cytochrome); KEGG: glcD1, glycolate oxidase subunit GlcD; PFAM: FAD linked oxidase domain protein, FAD linked oxidase domain-containing protein. (462 aa)
UFO1_0707PFAM: protein of unknown function DUF224 cysteine-rich region domain protein, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: Fe-S oxidoreductase. (408 aa)
UFO1_0827KEGG: aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain-containing protein. (640 aa)
UFO1_0875TIGRFAM: tartrate dehydrogenase; KEGG: tartrate dehydrogenase; PFAM: Isopropylmalate dehydrogenase-like domain. (357 aa)
UFO1_0889KEGG: glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein. (328 aa)
UFO1_0900TIGRFAM: lactaldehyde reductase; KEGG: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase. (386 aa)
UFO1_1073D-lactate dehydrogenase (cytochrome); KEGG: fad/fmn-containing dehydrogenase; PFAM: FAD linked oxidase domain protein, FAD linked oxidase domain-containing protein. (474 aa)
UFO1_1192PFAM: Catalase domain protein; KEGG: catalase; SMART: Catalase domain protein; Belongs to the catalase family. (483 aa)
UFO1_1649PFAM: Glutamine synthetase type III domain-containing protein, glutamine synthetase catalytic region; KEGG: glnA1, glutamine synthetase GlnA. (697 aa)
UFO1_1650PFAM: glutamine synthetase catalytic region; KEGG: glutamine synthetase catalytic region. (633 aa)
UFO1_17443-isopropylmalate dehydratase; KEGG: aconitase A; PFAM: aconitate hydratase domain-containing protein. (798 aa)
gcvTAminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. (367 aa)
gcvHGlycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (129 aa)
gcvPAGlycine dehydrogenase (decarboxylating) subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (448 aa)
gcvPBGlycine dehydrogenase (decarboxylating) subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (483 aa)
UFO1_2006TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: lpd, dihydrolipoyl dehydrogenase Lpd; PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain, pyridine nucleotide-disulfide oxidoreductase dimerization region, FAD-dependent pyridine nucleotide-disulfide oxidoreductase. (468 aa)
UFO1_2771KEGG: D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein, FAD linked oxidase domain-containing protein. (460 aa)
UFO1_2772CoB--CoM heterodisulfide reductase; KEGG: hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein. (439 aa)
UFO1_2816D-lactate dehydrogenase (cytochrome); KEGG: glycolate oxidase; PFAM: FAD linked oxidase domain-containing protein, FAD linked oxidase domain protein. (472 aa)
UFO1_2836KEGG: ribulose 1,5-bisphosphate carboxylase, large subunit; PFAM: ribulose bisphosphate carboxylase large chain. (376 aa)
UFO1_2959TIGRFAM: methylmalonyl-CoA epimerase; KEGG: methylmalonyl-CoA epimerase. (135 aa)
UFO1_2961Hypothetical protein; KEGG: icmB, putative isobutyryl-CoA mutase, small subunit. (130 aa)
UFO1_2962KEGG: methylmalonyl-CoA mutase large subunit. (548 aa)
UFO1_3041TIGRFAM: methylmalonyl-CoA epimerase; KEGG: methylmalonyl-CoA epimerase. (135 aa)
UFO1_3073TIGRFAM: methylaspartate ammonia-lyase; KEGG: methylaspartate ammonia-lyase; PFAM: Methylaspartate ammonia-lyase, C-terminal, Methylaspartate ammonia-lyase, N-terminal. (416 aa)
glmEMethylaspartate mutase, E subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate). (484 aa)
glmS-2Methylaspartate mutase S chain; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate). (138 aa)
UFO1_3093TIGRFAM: acetyl-CoA acetyltransferase; KEGG: acetyl-CoA acetyltransferase; PFAM: Thiolase domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
UFO1_3142KEGG: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein. (319 aa)
UFO1_3146KEGG: xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Belongs to the hyi family. (259 aa)
UFO1_3282TIGRFAM: acetyl-CoA acetyltransferase; KEGG: acetyl-CoA acetyltransferase; PFAM: Thiolase domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family. (379 aa)
UFO1_3308PFAM: MaoC domain protein dehydratase; KEGG: acyl dehydratase. (138 aa)
UFO1_3314TIGRFAM: acetyl-CoA acetyltransferase; KEGG: atoB, acetyl-CoA acetyltransferase; PFAM: Thiolase domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
UFO1_3513TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; KEGG: L(+)-tartrate dehydratase subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region. (201 aa)
UFO1_3514TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; KEGG: tartrate dehydratase subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region. (299 aa)
UFO1_3572PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein; KEGG: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit. (300 aa)
UFO1_3688TIGRFAM: acetyl-CoA acetyltransferase; KEGG: thiolase; PFAM: Thiolase domain-containing protein; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
UFO1_3800KEGG: kdgA, KHG/KDPG aldolase KdgA; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase. (216 aa)
UFO1_3828TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: kdgA, KHG/KDPG aldolase KdgA; PFAM: KDPG and KHG aldolase. (213 aa)
UFO1_4012TIGRFAM: glycerate kinase; KEGG: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family. (379 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (312 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (411 aa)
UFO1_4435KEGG: 5'-nucleotidase. (217 aa)
UFO1_4550KEGG: D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein, D-isomer specific 2-hydroxyacid dehydrogenase catalytic region-containing protein. (325 aa)
UFO1_4669TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding protein. (294 aa)
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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