(13 nodes) Cellulose catabolic process network (Actinophytocola xinjiangensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OLF05363.1	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	OLF14135.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	OLF14405.1	Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	OLF12882.1	Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology. (751 aa)
	OLF12090.1	Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (645 aa)
	OLF12271.1	Cellobiohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	BLA60_09820	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (669 aa)
	BLA60_15475	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (961 aa)
	OLF10701.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	OLF08047.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	OLF06124.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	OLF05140.1	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (565 aa)
	OLF05141.1	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (966 aa)

Your Current Organism:

Actinophytocola xinjiangensis

NCBI taxonomy Id: 485602
Other names: A. xinjiangensis, Actinophytocola sp. QAIII60, Actinophytocola xinjiangensis Guo et al. 2011, Amycolatopsis sp. QAIII60, CGMCC 4.4663, DSM 45854, NBRC 106673, strain QAIII60

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BLA60_09820	BLA60_15475	BLA60_09820	BLA60_15475	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
BLA60_09820	OLF05140.1	BLA60_09820	BLA60_37820	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
BLA60_09820	OLF05363.1	BLA60_09820	BLA60_36695	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
BLA60_09820	OLF10701.1	BLA60_09820	BLA60_16190	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
BLA60_09820	OLF12090.1	BLA60_09820	BLA60_08700	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
BLA60_09820	OLF12271.1	BLA60_09820	BLA60_09810	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellobiohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
BLA60_09820	OLF12882.1	BLA60_09820	BLA60_06370	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
BLA60_09820	OLF14135.1	BLA60_09820	BLA60_02955	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
BLA60_09820	OLF14405.1	BLA60_09820	BLA60_04600	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
BLA60_15475	BLA60_09820	BLA60_15475	BLA60_09820	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
BLA60_15475	OLF05140.1	BLA60_15475	BLA60_37820	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
BLA60_15475	OLF05363.1	BLA60_15475	BLA60_36695	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
BLA60_15475	OLF10701.1	BLA60_15475	BLA60_16190	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
BLA60_15475	OLF12090.1	BLA60_15475	BLA60_08700	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
BLA60_15475	OLF12271.1	BLA60_15475	BLA60_09810	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellobiohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
BLA60_15475	OLF14405.1	BLA60_15475	BLA60_04600	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
OLF05140.1	BLA60_09820	BLA60_37820	BLA60_09820	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endoglucanase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
OLF05140.1	BLA60_15475	BLA60_37820	BLA60_15475	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
OLF05140.1	OLF05141.1	BLA60_37820	BLA60_37825	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
OLF05140.1	OLF05363.1	BLA60_37820	BLA60_36695	Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852

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