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rplT rplT rpmI rpmI rpsF rpsF rpsR rpsR rpsI rpsI rplM rplM EFH90858.1 EFH90858.1 rpsK rpsK rpmJ rpmJ rpsP rpsP rplS rplS rplI rplI rplY rplY rpmA rpmA rplU rplU rplK rplK rplA rplA rpsO rpsO
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplTRibosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (121 aa)
rpmIRibosomal protein L35; InterPro IPR001706; KEGG: ttr:Tter_0767 ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: D1CFH8 Ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (67 aa)
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (180 aa)
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (97 aa)
rpsICOGs: COG0103 Ribosomal protein S9; InterPro IPR020574:IPR000754:IPR014721:IPR020568; KEGG: tro:trd_0953 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: B9KZV6 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. (135 aa)
rplMRibosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (156 aa)
EFH90858.1COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: cac:CAC3103 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: Q97EK7 50S ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17. (199 aa)
rpsK30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (133 aa)
rpmJRibosomal protein L36; InterPro IPR000473; KEGG: fsu:Fisuc_1400 ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: C9RR12 Ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family. (38 aa)
rpsPCOGs: COG0228 Ribosomal protein S16; InterPro IPR000307; KEGG: hor:Hore_07300 ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: C1P6S5 Ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (93 aa)
rplSRibosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (150 aa)
rplIRibosomal protein L9; Binds to the 23S rRNA. (151 aa)
rplYRibosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (212 aa)
rpmACOGs: COG0211 Ribosomal protein L27; InterPro IPR001684:IPR018261; KEGG: hau:Haur_2669 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: A9B129 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (106 aa)
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (175 aa)
rplKRibosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (140 aa)
rplARibosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (236 aa)
rpsORibosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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