STRINGSTRING
Phep_2092 Phep_2092 Phep_1482 Phep_1482 Phep_1481 Phep_1481 Phep_0370 Phep_0370 ctaB ctaB Phep_0296 Phep_0296 hemH hemH Phep_3186 Phep_3186 Phep_3443 Phep_3443 hemE hemE hemL hemL Phep_3449 Phep_3449 hemA hemA Phep_3565 Phep_3565 Phep_3091 Phep_3091 Phep_3090 Phep_3090 Phep_2162 Phep_2162
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Phep_2092PFAM: Squalene/phytoene synthase. (278 aa)
Phep_1482PFAM: von Willebrand factor type A domain. (344 aa)
Phep_1481PFAM: von Willebrand factor type A domain. (332 aa)
Phep_0370Mg-chelatase subunit ChlI. (497 aa)
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (300 aa)
Phep_0296PFAM: Cytochrome oxidase assembly protein. (354 aa)
hemHFerrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (344 aa)
Phep_3186Conserved hypothetical protein; PFAM: Protein of unknown function (DUF1550); TIGRFAM: N-terminal double-transmembrane domain. (682 aa)
Phep_3443Conserved hypothetical protein; PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: conserved hypothetical integral membrane protein. (182 aa)
hemEUroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (340 aa)
hemLGlutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase. (457 aa)
Phep_3449Porphobilinogen synthase; PFAM: Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (322 aa)
hemAglutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (409 aa)
Phep_3565PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (435 aa)
Phep_3091uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (263 aa)
Phep_3090Siroheme synthase; PFAM: Domain of unknown function DUF81; TIGRFAM: siroheme synthase, N-terminal domain. (498 aa)
Phep_2162PFAM: Coproporphyrinogen III oxidase. (298 aa)
Your Current Organism:
Pedobacter heparinus
NCBI taxonomy Id: 485917
Other names: P. heparinus DSM 2366, Pedobacter heparinus DSM 2366, Pedobacter heparinus IFO 12017, Pedobacter heparinus LMG 10339, Pedobacter heparinus str. DSM 2366, Pedobacter heparinus strain DSM 2366
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