21 items (Penicillium freii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACN42_g10955	Uncharacterized protein. (809 aa)
	ACN42_g10352	SET domain-containing protein. (466 aa)
	ACN42_g7866	Uncharacterized protein. (169 aa)
	ACN42_g7421	Histone acetyltransferase. (528 aa)
	ACN42_g7112	Uncharacterized protein. (578 aa)
	ACN42_g6989	Uncharacterized protein. (177 aa)
	ACN42_g5283	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	ACN42_g5284	Histone H3; Belongs to the histone H3 family. (136 aa)
	ACN42_g3871	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (416 aa)
	ACN42_g3695	WD_REPEATS_REGION domain-containing protein. (518 aa)
	ACN42_g3027	PHD-type domain-containing protein. (847 aa)
	ACN42_g1665	WD_REPEATS_REGION domain-containing protein. (480 aa)
	ACN42_g1052	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. (1209 aa)
	ACN42_g10744	Uncharacterized protein. (377 aa)
	ACN42_g10526	Uncharacterized protein. (390 aa)
	ACN42_g9975	Uncharacterized protein. (554 aa)
	ACN42_g1083	SPRY domain-containing protein. (616 aa)
	ACN42_g10841	Uncharacterized protein. (113 aa)
	ACN42_g7339	Histone H2A; Belongs to the histone H2A family. (139 aa)
	ACN42_g7018	Uncharacterized protein. (185 aa)
	ACN42_g1445	Uncharacterized protein. (805 aa)

Your Current Organism:

Penicillium freii

NCBI taxonomy Id: 48697
Other names: CBS 476.84, IMI 285515, P. freii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACN42_g10352	ACN42_g1052	A0A101MA90	A0A101MSL4	SET domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	0.772
ACN42_g10352	ACN42_g1083	A0A101MA90	A0A117NRQ0	SET domain-containing protein.	SPRY domain-containing protein.	0.748
ACN42_g10352	ACN42_g10841	A0A101MA90	A0A124GPY1	SET domain-containing protein.	Uncharacterized protein.	0.585
ACN42_g10352	ACN42_g10955	A0A101MA90	A0A101M920	SET domain-containing protein.	Uncharacterized protein.	0.639
ACN42_g10352	ACN42_g1445	A0A101MA90	A0A124GSV2	SET domain-containing protein.	Uncharacterized protein.	0.697
ACN42_g10352	ACN42_g1665	A0A101MA90	A0A101MRQ6	SET domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.748
ACN42_g10352	ACN42_g3027	A0A101MA90	A0A101MP06	SET domain-containing protein.	PHD-type domain-containing protein.	0.587
ACN42_g10352	ACN42_g3695	A0A101MA90	A0A101MMP4	SET domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.459
ACN42_g10352	ACN42_g5283	A0A101MA90	A0A101MJN7	SET domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.738
ACN42_g10352	ACN42_g5284	A0A101MA90	A0A101MJW5	SET domain-containing protein.	Histone H3; Belongs to the histone H3 family.	0.628
ACN42_g10352	ACN42_g7018	A0A101MA90	A0A124GR50	SET domain-containing protein.	Uncharacterized protein.	0.585
ACN42_g10352	ACN42_g7112	A0A101MA90	A0A101MG78	SET domain-containing protein.	Uncharacterized protein.	0.459
ACN42_g10352	ACN42_g7339	A0A101MA90	A0A124GR12	SET domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.616
ACN42_g10352	ACN42_g7866	A0A101MA90	A0A101MEU1	SET domain-containing protein.	Uncharacterized protein.	0.585
ACN42_g10352	ACN42_g9975	A0A101MA90	A0A117NL72	SET domain-containing protein.	Uncharacterized protein.	0.554
ACN42_g1052	ACN42_g10352	A0A101MSL4	A0A101MA90	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	SET domain-containing protein.	0.772
ACN42_g1052	ACN42_g10526	A0A101MSL4	A0A117NKV6	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	Uncharacterized protein.	0.799
ACN42_g1052	ACN42_g10744	A0A101MSL4	A0A117NKR0	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	Uncharacterized protein.	0.795
ACN42_g1052	ACN42_g1083	A0A101MSL4	A0A117NRQ0	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	SPRY domain-containing protein.	0.996
ACN42_g1052	ACN42_g10841	A0A101MSL4	A0A124GPY1	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	Uncharacterized protein.	0.979