(5 nodes) Rieske iron-sulphur protein, and Peptidase M16, N-terminal network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UQCRFS1	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (240 aa)
	ENSPFOP00000005307	Peptidase (mitochondrial processing) alpha. (516 aa)
	ENSPFOP00000009551	Heme-binding protein soul4. (284 aa)
	LOC103147152	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family. (731 aa)
	ENSPFOP00000022982	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family. (498 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000005307	ENSPFOP00000009551	ENSPFOP00000005307	ENSPFOP00000009551	Peptidase (mitochondrial processing) alpha.	Heme-binding protein soul4.	0.891
ENSPFOP00000005307	ENSPFOP00000022982	ENSPFOP00000005307	ENSPFOP00000022982	Peptidase (mitochondrial processing) alpha.	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	0.985
ENSPFOP00000005307	LOC103147152	ENSPFOP00000005307	ENSPFOP00000009967	Peptidase (mitochondrial processing) alpha.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.956
ENSPFOP00000005307	UQCRFS1	ENSPFOP00000005307	ENSPFOP00000003544	Peptidase (mitochondrial processing) alpha.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.984
ENSPFOP00000009551	ENSPFOP00000005307	ENSPFOP00000009551	ENSPFOP00000005307	Heme-binding protein soul4.	Peptidase (mitochondrial processing) alpha.	0.891
ENSPFOP00000009551	ENSPFOP00000022982	ENSPFOP00000009551	ENSPFOP00000022982	Heme-binding protein soul4.	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	0.952
ENSPFOP00000009551	LOC103147152	ENSPFOP00000009551	ENSPFOP00000009967	Heme-binding protein soul4.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.958
ENSPFOP00000009551	UQCRFS1	ENSPFOP00000009551	ENSPFOP00000003544	Heme-binding protein soul4.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.997
ENSPFOP00000022982	ENSPFOP00000005307	ENSPFOP00000022982	ENSPFOP00000005307	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	Peptidase (mitochondrial processing) alpha.	0.985
ENSPFOP00000022982	ENSPFOP00000009551	ENSPFOP00000022982	ENSPFOP00000009551	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	Heme-binding protein soul4.	0.952
ENSPFOP00000022982	LOC103147152	ENSPFOP00000022982	ENSPFOP00000009967	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.975
ENSPFOP00000022982	UQCRFS1	ENSPFOP00000022982	ENSPFOP00000003544	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.989
LOC103147152	ENSPFOP00000005307	ENSPFOP00000009967	ENSPFOP00000005307	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	Peptidase (mitochondrial processing) alpha.	0.956
LOC103147152	ENSPFOP00000009551	ENSPFOP00000009967	ENSPFOP00000009551	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	Heme-binding protein soul4.	0.958
LOC103147152	ENSPFOP00000022982	ENSPFOP00000009967	ENSPFOP00000022982	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	0.975
LOC103147152	UQCRFS1	ENSPFOP00000009967	ENSPFOP00000003544	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.985
UQCRFS1	ENSPFOP00000005307	ENSPFOP00000003544	ENSPFOP00000005307	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Peptidase (mitochondrial processing) alpha.	0.984
UQCRFS1	ENSPFOP00000009551	ENSPFOP00000003544	ENSPFOP00000009551	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Heme-binding protein soul4.	0.997
UQCRFS1	ENSPFOP00000022982	ENSPFOP00000003544	ENSPFOP00000022982	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	0.989
UQCRFS1	LOC103147152	ENSPFOP00000003544	ENSPFOP00000009967	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family.	0.985