(12 nodes) Mixed, incl. RING finger protein 11, RING-H2 finger, and Protein K11-linked deubiquitination network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000002149	Tax1 (human T-cell leukemia virus type I) binding protein 1a. (757 aa)
	tnip1	TNFAIP3 interacting protein 1. (659 aa)
	tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1b. (839 aa)
	rnf11	Ring finger protein 11b. (154 aa)
	ndrg4	NDRG family member 4. (352 aa)
	vcpip1	Valosin containing protein (p97)/p47 complex interacting protein 1. (1158 aa)
	otud7b	OTU deubiquitinase 7B. (912 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (824 aa)
	LOC103137732	Ring finger protein 11a. (147 aa)
	LOC103135786	RING-type domain-containing protein. (160 aa)
	tgfbr3	Transforming growth factor, beta receptor III. (817 aa)
	ENSPFOP00000019519	Uncharacterized protein. (253 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000002149	LOC103135786	ENSPFOP00000002149	ENSPFOP00000014807	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	RING-type domain-containing protein.	0.557
ENSPFOP00000002149	LOC103137732	ENSPFOP00000002149	ENSPFOP00000013449	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	Ring finger protein 11a.	0.557
ENSPFOP00000002149	rnf11	ENSPFOP00000002149	ENSPFOP00000005162	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	Ring finger protein 11b.	0.557
ENSPFOP00000002149	tax1bp1	ENSPFOP00000002149	ENSPFOP00000004154	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	0.924
ENSPFOP00000002149	tnfaip3	ENSPFOP00000002149	ENSPFOP00000012510	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	Tumor necrosis factor, alpha-induced protein 3.	0.928
ENSPFOP00000002149	tnip1	ENSPFOP00000002149	ENSPFOP00000002609	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	TNFAIP3 interacting protein 1.	0.517
ENSPFOP00000019519	otud7b	ENSPFOP00000019519	ENSPFOP00000010883	Uncharacterized protein.	OTU deubiquitinase 7B.	0.729
ENSPFOP00000019519	tnfaip3	ENSPFOP00000019519	ENSPFOP00000012510	Uncharacterized protein.	Tumor necrosis factor, alpha-induced protein 3.	0.729
ENSPFOP00000019519	vcpip1	ENSPFOP00000019519	ENSPFOP00000005450	Uncharacterized protein.	Valosin containing protein (p97)/p47 complex interacting protein 1.	0.729
LOC103135786	ENSPFOP00000002149	ENSPFOP00000014807	ENSPFOP00000002149	RING-type domain-containing protein.	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	0.557
LOC103135786	ndrg4	ENSPFOP00000014807	ENSPFOP00000005292	RING-type domain-containing protein.	NDRG family member 4.	0.514
LOC103135786	tax1bp1	ENSPFOP00000014807	ENSPFOP00000004154	RING-type domain-containing protein.	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	0.690
LOC103135786	tgfbr3	ENSPFOP00000014807	ENSPFOP00000016969	RING-type domain-containing protein.	Transforming growth factor, beta receptor III.	0.520
LOC103135786	tnfaip3	ENSPFOP00000014807	ENSPFOP00000012510	RING-type domain-containing protein.	Tumor necrosis factor, alpha-induced protein 3.	0.730
LOC103137732	ENSPFOP00000002149	ENSPFOP00000013449	ENSPFOP00000002149	Ring finger protein 11a.	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	0.557
LOC103137732	tax1bp1	ENSPFOP00000013449	ENSPFOP00000004154	Ring finger protein 11a.	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	0.595
LOC103137732	tnfaip3	ENSPFOP00000013449	ENSPFOP00000012510	Ring finger protein 11a.	Tumor necrosis factor, alpha-induced protein 3.	0.687
ndrg4	LOC103135786	ENSPFOP00000005292	ENSPFOP00000014807	NDRG family member 4.	RING-type domain-containing protein.	0.514
ndrg4	rnf11	ENSPFOP00000005292	ENSPFOP00000005162	NDRG family member 4.	Ring finger protein 11b.	0.514
otud7b	ENSPFOP00000019519	ENSPFOP00000010883	ENSPFOP00000019519	OTU deubiquitinase 7B.	Uncharacterized protein.	0.729