29 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab24	RAB24, member RAS oncogene family. (203 aa)
	ENSPFOP00000000488	Uncharacterized protein. (207 aa)
	rabggtb	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (331 aa)
	rab1a	Uncharacterized protein. (203 aa)
	tbc1d20	TBC1 domain family, member 20. (397 aa)
	ptar1	Protein prenyltransferase alpha subunit repeat containing 1. (456 aa)
	LOC103142376	RAB42, member RAS oncogene family a. (265 aa)
	LOC103146837	Zgc:63863. (409 aa)
	ENSPFOP00000005485	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (449 aa)
	GCC2	GRIP domain-containing protein. (1629 aa)
	RAB6B	RAB6B, member RAS oncogene family. (217 aa)
	tbc1d22a	TBC1 domain family, member 22a. (551 aa)
	RAB41	RAB41, member RAS oncogene family. (211 aa)
	ENSPFOP00000012635	ZRAB1B, member RAS oncogene family a. (214 aa)
	LOC103136134	RAB15, member RAS oncogene family. (210 aa)
	LOC103140057	RAB18B, member RAS oncogene family. (205 aa)
	ENSPFOP00000013841	Zgc:171927. (217 aa)
	rab42	Si:dkey-34d22.5. (222 aa)
	rabif	RAB interacting factor. (125 aa)
	LOC103156873	Uncharacterized protein. (223 aa)
	rabggta	Rab geranylgeranyltransferase subunit alpha. (585 aa)
	rab15	RAB15, member RAS oncogene family. (213 aa)
	ENSPFOP00000017989	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (393 aa)
	LOC103141076	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. (657 aa)
	ENSPFOP00000019204	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (442 aa)
	rab6a	RAB6A, member RAS oncogene family. (208 aa)
	LOC103135635	RAB9B, member RAS oncogene family. (202 aa)
	ENSPFOP00000020269	Uncharacterized protein. (219 aa)
	RAB9A	RAB9A, member RAS oncogene family. (201 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000488	ENSPFOP00000005485	ENSPFOP00000000488	ENSPFOP00000005485	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.854
ENSPFOP00000000488	ENSPFOP00000013841	ENSPFOP00000000488	ENSPFOP00000013841	Uncharacterized protein.	Zgc:171927.	0.923
ENSPFOP00000000488	ENSPFOP00000017989	ENSPFOP00000000488	ENSPFOP00000017989	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.854
ENSPFOP00000000488	ENSPFOP00000019204	ENSPFOP00000000488	ENSPFOP00000019204	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.854
ENSPFOP00000000488	ENSPFOP00000020269	ENSPFOP00000000488	ENSPFOP00000020269	Uncharacterized protein.	Uncharacterized protein.	0.632
ENSPFOP00000000488	LOC103135635	ENSPFOP00000000488	ENSPFOP00000020186	Uncharacterized protein.	RAB9B, member RAS oncogene family.	0.634
ENSPFOP00000000488	LOC103136134	ENSPFOP00000000488	ENSPFOP00000013206	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.765
ENSPFOP00000000488	LOC103140057	ENSPFOP00000000488	ENSPFOP00000013519	Uncharacterized protein.	RAB18B, member RAS oncogene family.	0.487
ENSPFOP00000000488	LOC103141076	ENSPFOP00000000488	ENSPFOP00000019048	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.807
ENSPFOP00000000488	LOC103142376	ENSPFOP00000000488	ENSPFOP00000004716	Uncharacterized protein.	RAB42, member RAS oncogene family a.	0.409
ENSPFOP00000000488	LOC103146837	ENSPFOP00000000488	ENSPFOP00000005477	Uncharacterized protein.	Zgc:63863.	0.861
ENSPFOP00000000488	RAB41	ENSPFOP00000000488	ENSPFOP00000011446	Uncharacterized protein.	RAB41, member RAS oncogene family.	0.659
ENSPFOP00000000488	RAB6B	ENSPFOP00000000488	ENSPFOP00000007739	Uncharacterized protein.	RAB6B, member RAS oncogene family.	0.661
ENSPFOP00000000488	RAB9A	ENSPFOP00000000488	ENSPFOP00000020272	Uncharacterized protein.	RAB9A, member RAS oncogene family.	0.631
ENSPFOP00000000488	ptar1	ENSPFOP00000000488	ENSPFOP00000004403	Uncharacterized protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.668
ENSPFOP00000000488	rab15	ENSPFOP00000000488	ENSPFOP00000017871	Uncharacterized protein.	RAB15, member RAS oncogene family.	0.764
ENSPFOP00000000488	rab1a	ENSPFOP00000000488	ENSPFOP00000001756	Uncharacterized protein.	Uncharacterized protein.	0.922
ENSPFOP00000000488	rab42	ENSPFOP00000000488	ENSPFOP00000014511	Uncharacterized protein.	Si:dkey-34d22.5.	0.414
ENSPFOP00000000488	rab6a	ENSPFOP00000000488	ENSPFOP00000019630	Uncharacterized protein.	RAB6A, member RAS oncogene family.	0.659
ENSPFOP00000000488	rabggta	ENSPFOP00000000488	ENSPFOP00000016847	Uncharacterized protein.	Rab geranylgeranyltransferase subunit alpha.	0.782