(12 nodes) Mixed, incl. mRNA CDS binding, and Fox-1 C-terminal domain network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000000019	RNA binding motif protein 24b. (262 aa)
	ENSPFOP00000000021	RNA binding motif protein 24b. (247 aa)
	ENSPFOP00000001887	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events. (321 aa)
	elavl4	ELAV-like protein; Belongs to the RRM elav family. (457 aa)
	LOC103145795	RRM domain-containing protein. (252 aa)
	ENSPFOP00000007697	ELAV-like protein; Belongs to the RRM elav family. (369 aa)
	LOC103136652	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (381 aa)
	ENSPFOP00000009404	CUGBP, Elav-like family member 4. (358 aa)
	LOC103147802	RNA binding motif protein 38. (254 aa)
	CELF2	Cugbp, Elav-like family member 2. (467 aa)
	LOC103135118	RNA binding motif protein 24a. (233 aa)
	LOC103137756	RNA binding fox-1 homolog 2. (456 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CELF2	LOC103137756	ENSPFOP00000012976	ENSPFOP00000014297	Cugbp, Elav-like family member 2.	RNA binding fox-1 homolog 2.	0.599
ENSPFOP00000000019	ENSPFOP00000001887	ENSPFOP00000000019	ENSPFOP00000001887	RNA binding motif protein 24b.	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	0.659
ENSPFOP00000000019	LOC103136652	ENSPFOP00000000019	ENSPFOP00000009377	RNA binding motif protein 24b.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.766
ENSPFOP00000000019	LOC103137756	ENSPFOP00000000019	ENSPFOP00000014297	RNA binding motif protein 24b.	RNA binding fox-1 homolog 2.	0.642
ENSPFOP00000000019	elavl4	ENSPFOP00000000019	ENSPFOP00000004795	RNA binding motif protein 24b.	ELAV-like protein; Belongs to the RRM elav family.	0.484
ENSPFOP00000000021	ENSPFOP00000001887	ENSPFOP00000000021	ENSPFOP00000001887	RNA binding motif protein 24b.	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	0.658
ENSPFOP00000000021	LOC103136652	ENSPFOP00000000021	ENSPFOP00000009377	RNA binding motif protein 24b.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.767
ENSPFOP00000000021	LOC103137756	ENSPFOP00000000021	ENSPFOP00000014297	RNA binding motif protein 24b.	RNA binding fox-1 homolog 2.	0.641
ENSPFOP00000000021	elavl4	ENSPFOP00000000021	ENSPFOP00000004795	RNA binding motif protein 24b.	ELAV-like protein; Belongs to the RRM elav family.	0.485
ENSPFOP00000001887	ENSPFOP00000000019	ENSPFOP00000001887	ENSPFOP00000000019	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 24b.	0.659
ENSPFOP00000001887	ENSPFOP00000000021	ENSPFOP00000001887	ENSPFOP00000000021	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 24b.	0.658
ENSPFOP00000001887	ENSPFOP00000007697	ENSPFOP00000001887	ENSPFOP00000007697	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.543
ENSPFOP00000001887	LOC103135118	ENSPFOP00000001887	ENSPFOP00000013133	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 24a.	0.747
ENSPFOP00000001887	LOC103145795	ENSPFOP00000001887	ENSPFOP00000004997	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	RRM domain-containing protein.	0.751
ENSPFOP00000001887	LOC103147802	ENSPFOP00000001887	ENSPFOP00000011633	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 38.	0.751
ENSPFOP00000001887	elavl4	ENSPFOP00000001887	ENSPFOP00000004795	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.509
ENSPFOP00000007697	ENSPFOP00000001887	ENSPFOP00000007697	ENSPFOP00000001887	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	0.543
ENSPFOP00000007697	LOC103136652	ENSPFOP00000007697	ENSPFOP00000009377	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.573
ENSPFOP00000007697	LOC103137756	ENSPFOP00000007697	ENSPFOP00000014297	ELAV-like protein; Belongs to the RRM elav family.	RNA binding fox-1 homolog 2.	0.456
ENSPFOP00000007697	LOC103145795	ENSPFOP00000007697	ENSPFOP00000004997	ELAV-like protein; Belongs to the RRM elav family.	RRM domain-containing protein.	0.537