10 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000004460	Uncharacterized protein. (1108 aa)
	mllt3	MLLT3 super elongation complex subunit. (513 aa)
	LOC103147853	Si:ch211-13k12.2. (602 aa)
	aff4	AF4/FMR2 family, member 4. (1102 aa)
	ell2	Elongation factor, RNA polymerase II, 2. (672 aa)
	LOC103148213	Cyclin T1; Belongs to the cyclin family. (684 aa)
	eaf2	ELL associated factor 2. (264 aa)
	LOC103135991	Uncharacterized protein. (599 aa)
	eaf1	ELL associated factor 1. (259 aa)
	ENSPFOP00000030851	Uncharacterized protein. (83 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000004460	ENSPFOP00000030851	ENSPFOP00000004460	ENSPFOP00000030851	Uncharacterized protein.	Uncharacterized protein.	0.886
ENSPFOP00000004460	LOC103135991	ENSPFOP00000004460	ENSPFOP00000017361	Uncharacterized protein.	Uncharacterized protein.	0.849
ENSPFOP00000004460	LOC103147853	ENSPFOP00000004460	ENSPFOP00000006621	Uncharacterized protein.	Si:ch211-13k12.2.	0.849
ENSPFOP00000004460	LOC103148213	ENSPFOP00000004460	ENSPFOP00000013627	Uncharacterized protein.	Cyclin T1; Belongs to the cyclin family.	0.889
ENSPFOP00000004460	aff4	ENSPFOP00000004460	ENSPFOP00000007272	Uncharacterized protein.	AF4/FMR2 family, member 4.	0.712
ENSPFOP00000004460	eaf1	ENSPFOP00000004460	ENSPFOP00000018493	Uncharacterized protein.	ELL associated factor 1.	0.947
ENSPFOP00000004460	eaf2	ENSPFOP00000004460	ENSPFOP00000016154	Uncharacterized protein.	ELL associated factor 2.	0.847
ENSPFOP00000004460	ell2	ENSPFOP00000004460	ENSPFOP00000010346	Uncharacterized protein.	Elongation factor, RNA polymerase II, 2.	0.854
ENSPFOP00000004460	mllt3	ENSPFOP00000004460	ENSPFOP00000004974	Uncharacterized protein.	MLLT3 super elongation complex subunit.	0.886
ENSPFOP00000030851	ENSPFOP00000004460	ENSPFOP00000030851	ENSPFOP00000004460	Uncharacterized protein.	Uncharacterized protein.	0.886
ENSPFOP00000030851	LOC103135991	ENSPFOP00000030851	ENSPFOP00000017361	Uncharacterized protein.	Uncharacterized protein.	0.744
ENSPFOP00000030851	LOC103147853	ENSPFOP00000030851	ENSPFOP00000006621	Uncharacterized protein.	Si:ch211-13k12.2.	0.744
ENSPFOP00000030851	LOC103148213	ENSPFOP00000030851	ENSPFOP00000013627	Uncharacterized protein.	Cyclin T1; Belongs to the cyclin family.	0.703
ENSPFOP00000030851	aff4	ENSPFOP00000030851	ENSPFOP00000007272	Uncharacterized protein.	AF4/FMR2 family, member 4.	0.882
ENSPFOP00000030851	eaf1	ENSPFOP00000030851	ENSPFOP00000018493	Uncharacterized protein.	ELL associated factor 1.	0.867
ENSPFOP00000030851	eaf2	ENSPFOP00000030851	ENSPFOP00000016154	Uncharacterized protein.	ELL associated factor 2.	0.820
ENSPFOP00000030851	ell2	ENSPFOP00000030851	ENSPFOP00000010346	Uncharacterized protein.	Elongation factor, RNA polymerase II, 2.	0.744
LOC103135991	ENSPFOP00000004460	ENSPFOP00000017361	ENSPFOP00000004460	Uncharacterized protein.	Uncharacterized protein.	0.849
LOC103135991	ENSPFOP00000030851	ENSPFOP00000017361	ENSPFOP00000030851	Uncharacterized protein.	Uncharacterized protein.	0.744
LOC103135991	LOC103148213	ENSPFOP00000017361	ENSPFOP00000013627	Uncharacterized protein.	Cyclin T1; Belongs to the cyclin family.	0.730