10 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103150752	Exportin 1 (CRM1 homolog, yeast) a. (1066 aa)
	kpnb1	Karyopherin (importin) beta 1. (876 aa)
	rcc1	Regulator of chromosome condensation 1. (420 aa)
	ranbp1	RAN binding protein 1. (217 aa)
	LOC103154927	Exportin 1 (CRM1 homolog, yeast) b. (1071 aa)
	snupn	Snurportin 1. (376 aa)
	rangap1	RAN GTPase activating protein 1a. (578 aa)
	LOC103143341	Ran GTPase activating protein 1b. (564 aa)
	ENSPFOP00000017429	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family. (896 aa)
	ENSPFOP00000022111	Uncharacterized protein. (306 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000017429	LOC103143341	ENSPFOP00000017429	ENSPFOP00000017011	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	Ran GTPase activating protein 1b.	0.960
ENSPFOP00000017429	LOC103150752	ENSPFOP00000017429	ENSPFOP00000001401	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	Exportin 1 (CRM1 homolog, yeast) a.	0.957
ENSPFOP00000017429	LOC103154927	ENSPFOP00000017429	ENSPFOP00000013322	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	Exportin 1 (CRM1 homolog, yeast) b.	0.957
ENSPFOP00000017429	kpnb1	ENSPFOP00000017429	ENSPFOP00000009093	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	Karyopherin (importin) beta 1.	0.979
ENSPFOP00000017429	ranbp1	ENSPFOP00000017429	ENSPFOP00000011018	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	RAN binding protein 1.	0.987
ENSPFOP00000017429	rangap1	ENSPFOP00000017429	ENSPFOP00000014314	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	RAN GTPase activating protein 1a.	0.960
ENSPFOP00000017429	rcc1	ENSPFOP00000017429	ENSPFOP00000009443	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	Regulator of chromosome condensation 1.	0.967
ENSPFOP00000017429	snupn	ENSPFOP00000017429	ENSPFOP00000014276	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	Snurportin 1.	0.845
ENSPFOP00000022111	LOC103143341	ENSPFOP00000022111	ENSPFOP00000017011	Uncharacterized protein.	Ran GTPase activating protein 1b.	0.867
ENSPFOP00000022111	LOC103150752	ENSPFOP00000022111	ENSPFOP00000001401	Uncharacterized protein.	Exportin 1 (CRM1 homolog, yeast) a.	0.784
ENSPFOP00000022111	LOC103154927	ENSPFOP00000022111	ENSPFOP00000013322	Uncharacterized protein.	Exportin 1 (CRM1 homolog, yeast) b.	0.784
ENSPFOP00000022111	kpnb1	ENSPFOP00000022111	ENSPFOP00000009093	Uncharacterized protein.	Karyopherin (importin) beta 1.	0.919
ENSPFOP00000022111	ranbp1	ENSPFOP00000022111	ENSPFOP00000011018	Uncharacterized protein.	RAN binding protein 1.	0.848
ENSPFOP00000022111	rangap1	ENSPFOP00000022111	ENSPFOP00000014314	Uncharacterized protein.	RAN GTPase activating protein 1a.	0.867
ENSPFOP00000022111	rcc1	ENSPFOP00000022111	ENSPFOP00000009443	Uncharacterized protein.	Regulator of chromosome condensation 1.	0.571
ENSPFOP00000022111	snupn	ENSPFOP00000022111	ENSPFOP00000014276	Uncharacterized protein.	Snurportin 1.	0.610
LOC103143341	ENSPFOP00000017429	ENSPFOP00000017011	ENSPFOP00000017429	Ran GTPase activating protein 1b.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.960
LOC103143341	ENSPFOP00000022111	ENSPFOP00000017011	ENSPFOP00000022111	Ran GTPase activating protein 1b.	Uncharacterized protein.	0.867
LOC103143341	LOC103150752	ENSPFOP00000017011	ENSPFOP00000001401	Ran GTPase activating protein 1b.	Exportin 1 (CRM1 homolog, yeast) a.	0.756
LOC103143341	LOC103154927	ENSPFOP00000017011	ENSPFOP00000013322	Ran GTPase activating protein 1b.	Exportin 1 (CRM1 homolog, yeast) b.	0.756