51 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103147859	Si:dkeyp-59c12.1. (201 aa)
	RAP2A	RAP2A, member of RAS oncogene family. (183 aa)
	rap2c	RAP2C, member of RAS oncogene family. (183 aa)
	rerg	RAS like estrogen regulated growth inhibitor. (200 aa)
	ENSPFOP00000030671	Uncharacterized protein. (135 aa)
	CDC42	Cell division cycle 42. (191 aa)
	rab5c-2	RAB5C, member RAS oncogene family. (220 aa)
	LOC103147000	Uncharacterized protein. (218 aa)
	ENSPFOP00000020414	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (176 aa)
	RAP2B	RAP2B, member of RAS oncogene family. (184 aa)
	ARF6	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (176 aa)
	ENSPFOP00000020028	RAP2B, member of RAS oncogene family. (200 aa)
	LOC103147563	V-ral simian leukemia viral oncogene homolog Aa (ras related). (206 aa)
	ENSPFOP00000017869	RAS-like, family 11, member B. (249 aa)
	KRAS	V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog. (189 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)
	LOC103136753	Uncharacterized protein. (191 aa)
	LOC103136751	Uncharacterized protein. (191 aa)
	ENSPFOP00000013841	Zgc:171927. (217 aa)
	ENSPFOP00000012874	annotation not available (185 aa)
	ENSPFOP00000012635	ZRAB1B, member RAS oncogene family a. (214 aa)
	rab5c	RAB5C, member RAS oncogene family. (220 aa)
	LOC103150818	RAB11a, member RAS oncogene family, like. (216 aa)
	LOC103135088	RAB5A, member RAS oncogene family, a. (216 aa)
	LOC103154760	RAB27B, member RAS oncogene family. (218 aa)
	LOC103146449	Uncharacterized protein. (191 aa)
	LOC103131161	RAB11a, member RAS oncogene family. (215 aa)
	LOC103136271	RAB4B, member RAS oncogene family. (213 aa)
	rasl12	RAS-like, family 12. (245 aa)
	ENSPFOP00000008681	Uncharacterized protein. (152 aa)
	ENSPFOP00000000351	RAB5B, member RAS oncogene family. (216 aa)
	ENSPFOP00000000488	Uncharacterized protein. (207 aa)
	mras	Muscle RAS oncogene homolog. (208 aa)
	RALB	RAS like proto-oncogene B. (207 aa)
	ENSPFOP00000001087	Uncharacterized protein. (185 aa)
	rab1a	Uncharacterized protein. (203 aa)
	rab27a	RAB27A, member RAS oncogene family. (220 aa)
	ENSPFOP00000002884	RAS-like, family 11, member A. (256 aa)
	LOC103145773	RAB7a, member RAS oncogene family. (207 aa)
	LOC103155278	Zgc:171704. (211 aa)
	rap1a	RAP1A, member of RAS oncogene family b. (185 aa)
	LOC103143223	Uncharacterized protein. (207 aa)
	rab5a	RAB5A, member RAS oncogene family, b. (216 aa)
	LOC103144092	Cell division cycle 42. (191 aa)
	LOC103150928	Uncharacterized protein. (200 aa)
	LOC103155714	Uncharacterized protein. (223 aa)
	LOC103155165	RAB11B, member RAS oncogene family, a. (218 aa)
	LOC103155167	RAB11B, member RAS oncogene family, b. (218 aa)
	ENSPFOP00000006175	Uncharacterized protein. (219 aa)
	LOC103139095	RAP1A, member of RAS oncogene family a. (185 aa)
	LOC103145420	Zgc:55558. (187 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	CDC42	ENSPFOP00000020314	ENSPFOP00000028086	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Cell division cycle 42.	0.605
ARF6	ENSPFOP00000000488	ENSPFOP00000020314	ENSPFOP00000000488	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.408
ARF6	ENSPFOP00000012635	ENSPFOP00000020314	ENSPFOP00000012635	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	ZRAB1B, member RAS oncogene family a.	0.408
ARF6	ENSPFOP00000013841	ENSPFOP00000020314	ENSPFOP00000013841	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Zgc:171927.	0.407
ARF6	ENSPFOP00000030671	ENSPFOP00000020314	ENSPFOP00000030671	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.562
ARF6	LOC103131161	ENSPFOP00000020314	ENSPFOP00000009278	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB11a, member RAS oncogene family.	0.420
ARF6	LOC103136271	ENSPFOP00000020314	ENSPFOP00000009096	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB4B, member RAS oncogene family.	0.579
ARF6	LOC103136751	ENSPFOP00000020314	ENSPFOP00000014394	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.562
ARF6	LOC103136753	ENSPFOP00000020314	ENSPFOP00000014396	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.562
ARF6	LOC103143223	ENSPFOP00000020314	ENSPFOP00000003828	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.411
ARF6	LOC103144092	ENSPFOP00000020314	ENSPFOP00000004328	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Cell division cycle 42.	0.605
ARF6	LOC103145773	ENSPFOP00000020314	ENSPFOP00000003360	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB7a, member RAS oncogene family.	0.411
ARF6	LOC103146449	ENSPFOP00000020314	ENSPFOP00000009597	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.562
ARF6	LOC103147000	ENSPFOP00000020314	ENSPFOP00000026697	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.420
ARF6	LOC103150818	ENSPFOP00000020314	ENSPFOP00000011334	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB11a, member RAS oncogene family, like.	0.420
ARF6	LOC103155165	ENSPFOP00000020314	ENSPFOP00000006092	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB11B, member RAS oncogene family, a.	0.420
ARF6	LOC103155167	ENSPFOP00000020314	ENSPFOP00000006153	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB11B, member RAS oncogene family, b.	0.420
ARF6	rab1a	ENSPFOP00000020314	ENSPFOP00000001756	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.408
ARF6	rab4a	ENSPFOP00000020314	ENSPFOP00000014685	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB4a, member RAS oncogene family.	0.579
CDC42	ARF6	ENSPFOP00000028086	ENSPFOP00000020314	Cell division cycle 42.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.605