36 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103148202	Transcription elongation factor A (SII), 2. (319 aa)
	LOC103134070	Elongin A, like. (658 aa)
	LOC103137738	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
	ENSPFOP00000001631	SET domain containing 2, histone lysine methyltransferase. (2362 aa)
	ell	Elongation factor RNA polymerase II. (645 aa)
	supt16h	SPT16 homolog, facilitates chromatin remodeling subunit. (1030 aa)
	ELOF1	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
	eloa	Elongin A. (687 aa)
	LOC103147066	B30.2/SPRY domain-containing protein. (708 aa)
	paf1	PAF1 homolog, Paf1/RNA polymerase II complex component. (530 aa)
	tcea1	Transcription elongation factor A (SII), 1. (311 aa)
	ENSPFOP00000006365	PCI domain containing 2. (400 aa)
	LOC103147853	Si:ch211-13k12.2. (602 aa)
	ENSPFOP00000006683	Si:ch211-13k12.2. (540 aa)
	ENSPFOP00000006865	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (531 aa)
	ELOB	Elongin B. (119 aa)
	ENSPFOP00000009506	Transcription elongation factor A (SII), 3. (540 aa)
	ell2	Elongation factor, RNA polymerase II, 2. (672 aa)
	ENSPFOP00000010724	Fibronectin type-III domain-containing protein. (637 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
	supt6h	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1753 aa)
	ENSPFOP00000011510	Transcription elongation factor SPT5. (1004 aa)
	ctr9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1154 aa)
	ENSPFOP00000011898	RTF1 homolog, Paf1/RNA polymerase II complex component. (664 aa)
	ADRM1	Adhesion regulating molecule 1. (414 aa)
	ENSPFOP00000024829	Cyclin-dependent kinase 12. (1283 aa)
	cdk13	Cyclin-dependent kinase 13. (1409 aa)
	eny2	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (95 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (631 aa)
	LOC103135991	Uncharacterized protein. (599 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	LOC103155270	Uncharacterized protein. (627 aa)
	ENSPFOP00000014619	B30.2/SPRY domain-containing protein. (689 aa)
	wdr61	WD repeat domain 61. (305 aa)
	ENSPFOP00000013383	Elongin B. (118 aa)
	ENSPFOP00000012105	Adhesion regulating molecule 1. (422 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOB	ENSPFOP00000006683	ENSPFOP00000007353	ENSPFOP00000006683	Elongin B.	Si:ch211-13k12.2.	0.689
ELOB	ENSPFOP00000006865	ENSPFOP00000007353	ENSPFOP00000006865	Elongin B.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.806
ELOB	ENSPFOP00000009506	ENSPFOP00000007353	ENSPFOP00000009506	Elongin B.	Transcription elongation factor A (SII), 3.	0.573
ELOB	ENSPFOP00000013383	ENSPFOP00000007353	ENSPFOP00000013383	Elongin B.	Elongin B.	0.959
ELOB	LOC103134070	ENSPFOP00000007353	ENSPFOP00000028384	Elongin B.	Elongin A, like.	0.923
ELOB	LOC103135991	ENSPFOP00000007353	ENSPFOP00000017361	Elongin B.	Uncharacterized protein.	0.689
ELOB	LOC103147853	ENSPFOP00000007353	ENSPFOP00000006621	Elongin B.	Si:ch211-13k12.2.	0.689
ELOB	LOC103148202	ENSPFOP00000007353	ENSPFOP00000013236	Elongin B.	Transcription elongation factor A (SII), 2.	0.573
ELOB	LOC103155270	ENSPFOP00000007353	ENSPFOP00000016795	Elongin B.	Uncharacterized protein.	0.689
ELOB	ctr9	ENSPFOP00000007353	ENSPFOP00000011720	Elongin B.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.800
ELOB	ell	ENSPFOP00000007353	ENSPFOP00000001845	Elongin B.	Elongation factor RNA polymerase II.	0.689
ELOB	ell2	ENSPFOP00000007353	ENSPFOP00000010346	Elongin B.	Elongation factor, RNA polymerase II, 2.	0.689
ELOB	eloa	ENSPFOP00000007353	ENSPFOP00000003436	Elongin B.	Elongin A.	0.923
ELOB	gtf2f1	ENSPFOP00000007353	ENSPFOP00000011064	Elongin B.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.639
ELOB	leo1	ENSPFOP00000007353	ENSPFOP00000017868	Elongin B.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.995
ELOB	paf1	ENSPFOP00000007353	ENSPFOP00000004961	Elongin B.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.741
ELOB	polr2i	ENSPFOP00000007353	ENSPFOP00000016884	Elongin B.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.693
ELOB	supt16h	ENSPFOP00000007353	ENSPFOP00000002163	Elongin B.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.741
ELOB	tcea1	ENSPFOP00000007353	ENSPFOP00000005020	Elongin B.	Transcription elongation factor A (SII), 1.	0.573
ELOB	wdr61	ENSPFOP00000007353	ENSPFOP00000014499	Elongin B.	WD repeat domain 61.	0.679