40 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103150989	Zgc:193690. (487 aa)
	thoc7	THO complex 7. (203 aa)
	NUP214	Nucleoporin 214. (1694 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (656 aa)
	nup133	Nucleoporin 133. (1116 aa)
	ENSPFOP00000013080	Minichromosome maintenance complex component 3 associated protein. (1950 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	ythdc1	YTH domain containing 1. (663 aa)
	sarnp	SAP domain containing ribonucleoprotein. (212 aa)
	gle1	GLE1 RNA export mediator. (747 aa)
	LOC103137288	Translocated promoter region b, nuclear basket protein. (2358 aa)
	LOC103153884	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
	thoc5	THO complex 5. (685 aa)
	LOC103133395	RRM domain-containing protein. (243 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (902 aa)
	LOC103137614	RRM domain-containing protein. (168 aa)
	eny2	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (95 aa)
	ENSPFOP00000019679	THO complex 2. (1548 aa)
	nup155	Nucleoporin 155. (1367 aa)
	thoc1	THO complex 1. (654 aa)
	LOC103143640	Polymerase (DNA-directed), delta interacting protein 3. (488 aa)
	ENSPFOP00000028952	Aly/REF export factor. (274 aa)
	LOC107836566	Uncharacterized protein. (192 aa)
	DDX39A	DExD-box helicase 39A. (427 aa)
	IWS1	Interacts with SUPT6H, CTD assembly factor 1. (740 aa)
	ENSPFOP00000009319	Zgc:153681. (625 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
	LOC103150989-2	ATP-dependent RNA helicase DDX19B-like. (487 aa)
	thoc6	THO complex 6. (323 aa)
	thoc3	THO complex 3. (349 aa)
	nup160	Nucleoporin 160. (1396 aa)
	tpr	Translocated promoter region a, nuclear basket protein. (2481 aa)
	ENSPFOP00000006365	PCI domain containing 2. (400 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	ENSPFOP00000004888	SEM1 26S proteasome complex subunit. (71 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (799 aa)
	alkbh5	AlkB homolog 5, RNA demethylase. (361 aa)
	LOC103150096	Uncharacterized protein. (427 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (125 aa)
	chtop	Chromatin target of PRMT1a. (245 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX39A	ENSPFOP00000004888	ENSPFOP00000010100	ENSPFOP00000004888	DExD-box helicase 39A.	SEM1 26S proteasome complex subunit.	0.467
DDX39A	ENSPFOP00000006365	ENSPFOP00000010100	ENSPFOP00000006365	DExD-box helicase 39A.	PCI domain containing 2.	0.565
DDX39A	ENSPFOP00000009319	ENSPFOP00000010100	ENSPFOP00000009319	DExD-box helicase 39A.	Zgc:153681.	0.856
DDX39A	ENSPFOP00000013080	ENSPFOP00000010100	ENSPFOP00000013080	DExD-box helicase 39A.	Minichromosome maintenance complex component 3 associated protein.	0.729
DDX39A	ENSPFOP00000019679	ENSPFOP00000010100	ENSPFOP00000019679	DExD-box helicase 39A.	THO complex 2.	0.980
DDX39A	ENSPFOP00000028952	ENSPFOP00000010100	ENSPFOP00000028952	DExD-box helicase 39A.	Aly/REF export factor.	0.978
DDX39A	LOC103133395	ENSPFOP00000010100	ENSPFOP00000017180	DExD-box helicase 39A.	RRM domain-containing protein.	0.974
DDX39A	LOC103137288	ENSPFOP00000010100	ENSPFOP00000014127	DExD-box helicase 39A.	Translocated promoter region b, nuclear basket protein.	0.533
DDX39A	LOC103137614	ENSPFOP00000010100	ENSPFOP00000018101	DExD-box helicase 39A.	RRM domain-containing protein.	0.797
DDX39A	LOC103143640	ENSPFOP00000010100	ENSPFOP00000028637	DExD-box helicase 39A.	Polymerase (DNA-directed), delta interacting protein 3.	0.957
DDX39A	LOC103150989	ENSPFOP00000010100	ENSPFOP00000007252	DExD-box helicase 39A.	Zgc:193690.	0.683
DDX39A	LOC103150989-2	ENSPFOP00000010100	ENSPFOP00000008772	DExD-box helicase 39A.	ATP-dependent RNA helicase DDX19B-like.	0.683
DDX39A	LOC103153884	ENSPFOP00000010100	ENSPFOP00000015573	DExD-box helicase 39A.	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	0.682
DDX39A	LOC107836566	ENSPFOP00000010100	ENSPFOP00000031267	DExD-box helicase 39A.	Uncharacterized protein.	0.841
DDX39A	NCBP1	ENSPFOP00000010100	ENSPFOP00000004402	DExD-box helicase 39A.	Nuclear cap binding protein subunit 1.	0.889
DDX39A	NUP214	ENSPFOP00000010100	ENSPFOP00000010841	DExD-box helicase 39A.	Nucleoporin 214.	0.714
DDX39A	SRSF3	ENSPFOP00000010100	ENSPFOP00000000504	DExD-box helicase 39A.	Serine and arginine rich splicing factor 3.	0.797
DDX39A	chtop	ENSPFOP00000010100	ENSPFOP00000000106	DExD-box helicase 39A.	Chromatin target of PRMT1a.	0.908
DDX39A	eny2	ENSPFOP00000010100	ENSPFOP00000019374	DExD-box helicase 39A.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.680
DDX39A	gle1	ENSPFOP00000010100	ENSPFOP00000013854	DExD-box helicase 39A.	GLE1 RNA export mediator.	0.739