(39 nodes) Carboxy-lyase activity network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000017029	AIRC domain-containing protein. (425 aa)
	ENSPFOP00000017782	Histidine decarboxylase. (482 aa)
	me1	Malic enzyme. (588 aa)
	ggcx	Gamma-glutamyl carboxylase. (767 aa)
	ENSPFOP00000022613	Tantalus domain-containing protein. (175 aa)
	ENSPFOP00000030074	Fumarylacetoacetate hydrolase domain containing 1. (222 aa)
	ECHDC1	Ethylmalonyl-CoA decarboxylase 1; Belongs to the enoyl-CoA hydratase/isomerase family. (313 aa)
	ddc	Dopa decarboxylase. (481 aa)
	mvd	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes. (404 aa)
	LOC103151571	Uncharacterized protein. (587 aa)
	ENSPFOP00000016078	Pyridoxal-dependent decarboxylase domain containing 1. (795 aa)
	ENSPFOP00000000140	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily. (337 aa)
	pck1	Phosphoenolpyruvate carboxykinase 1 (soluble). (637 aa)
	LOC103141092	Cysteine sulfinic acid decarboxylase. (494 aa)
	amd1	S-adenosylmethionine decarboxylase proenzyme. (335 aa)
	umps	Uridine monophosphate synthetase. (487 aa)
	ENSPFOP00000006804	Phosphopantothenoylcysteine decarboxylase. (210 aa)
	ENSPFOP00000007575	Ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase. (202 aa)
	ENSPFOP00000008218	Glutamate decarboxylase 2. (586 aa)
	ENSPFOP00000008690	Uncharacterized protein. (491 aa)
	GADL1	Glutamate decarboxylase like 1. (483 aa)
	GOT1	Aspartate aminotransferase. (410 aa)
	odc1	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (460 aa)
	pck2	Phosphoenolpyruvate carboxykinase 2 (mitochondrial). (635 aa)
	acod1	Aconitate decarboxylase 1. (474 aa)
	gad1	Glutamate decarboxylase 1a. (595 aa)
	LOC103135609	Immunoresponsive gene 1, like. (494 aa)
	LOC103138118	D-dopachrome tautomerase. (118 aa)
	mlycd	Malonyl-CoA decarboxylase. (504 aa)
	ENSPFOP00000012266	Immunoresponsive gene 1, like. (495 aa)
	azin1b	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (435 aa)
	ENSPFOP00000012577	Aspartate aminotransferase. (413 aa)
	azin1	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (453 aa)
	PISD	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. (370 aa)
	urod	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (368 aa)
	LOC103140321	Malic enzyme. (618 aa)
	uxs1	UDP-glucuronate decarboxylase 1. (419 aa)
	ENSPFOP00000019283	Malic enzyme. (559 aa)
	LOC103135426	Malic enzyme. (582 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000140	mlycd	ENSPFOP00000000140	ENSPFOP00000012200	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.	Malonyl-CoA decarboxylase.	0.846
ENSPFOP00000006804	ENSPFOP00000012577	ENSPFOP00000006804	ENSPFOP00000012577	Phosphopantothenoylcysteine decarboxylase.	Aspartate aminotransferase.	0.533
ENSPFOP00000006804	GOT1	ENSPFOP00000006804	ENSPFOP00000009543	Phosphopantothenoylcysteine decarboxylase.	Aspartate aminotransferase.	0.533
ENSPFOP00000006804	urod	ENSPFOP00000006804	ENSPFOP00000014010	Phosphopantothenoylcysteine decarboxylase.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.561
ENSPFOP00000008218	ENSPFOP00000008690	ENSPFOP00000008218	ENSPFOP00000008690	Glutamate decarboxylase 2.	Uncharacterized protein.	0.752
ENSPFOP00000008218	ENSPFOP00000012266	ENSPFOP00000008218	ENSPFOP00000012266	Glutamate decarboxylase 2.	Immunoresponsive gene 1, like.	0.505
ENSPFOP00000008218	ENSPFOP00000012577	ENSPFOP00000008218	ENSPFOP00000012577	Glutamate decarboxylase 2.	Aspartate aminotransferase.	0.906
ENSPFOP00000008218	ENSPFOP00000017782	ENSPFOP00000008218	ENSPFOP00000017782	Glutamate decarboxylase 2.	Histidine decarboxylase.	0.633
ENSPFOP00000008218	GADL1	ENSPFOP00000008218	ENSPFOP00000009097	Glutamate decarboxylase 2.	Glutamate decarboxylase like 1.	0.927
ENSPFOP00000008218	GOT1	ENSPFOP00000008218	ENSPFOP00000009543	Glutamate decarboxylase 2.	Aspartate aminotransferase.	0.908
ENSPFOP00000008218	LOC103135609	ENSPFOP00000008218	ENSPFOP00000012143	Glutamate decarboxylase 2.	Immunoresponsive gene 1, like.	0.505
ENSPFOP00000008218	LOC103141092	ENSPFOP00000008218	ENSPFOP00000001462	Glutamate decarboxylase 2.	Cysteine sulfinic acid decarboxylase.	0.927
ENSPFOP00000008218	LOC103151571	ENSPFOP00000008218	ENSPFOP00000015462	Glutamate decarboxylase 2.	Uncharacterized protein.	0.930
ENSPFOP00000008218	PISD	ENSPFOP00000008218	ENSPFOP00000013693	Glutamate decarboxylase 2.	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.	0.401
ENSPFOP00000008218	acod1	ENSPFOP00000008218	ENSPFOP00000010842	Glutamate decarboxylase 2.	Aconitate decarboxylase 1.	0.505
ENSPFOP00000008218	azin1	ENSPFOP00000008218	ENSPFOP00000013440	Glutamate decarboxylase 2.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.497
ENSPFOP00000008218	azin1b	ENSPFOP00000008218	ENSPFOP00000012408	Glutamate decarboxylase 2.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.497
ENSPFOP00000008218	ddc	ENSPFOP00000008218	ENSPFOP00000017930	Glutamate decarboxylase 2.	Dopa decarboxylase.	0.629
ENSPFOP00000008218	gad1	ENSPFOP00000008218	ENSPFOP00000011287	Glutamate decarboxylase 2.	Glutamate decarboxylase 1a.	0.930
ENSPFOP00000008218	odc1	ENSPFOP00000008218	ENSPFOP00000009868	Glutamate decarboxylase 2.	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.497