12 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IWS1	Interacts with SUPT6H, CTD assembly factor 1. (740 aa)
	ENSPFOP00000006365	PCI domain containing 2. (400 aa)
	LOC103150989	Zgc:193690. (487 aa)
	LOC103150989-2	ATP-dependent RNA helicase DDX19B-like. (487 aa)
	ENSPFOP00000009319	Zgc:153681. (625 aa)
	sarnp	SAP domain containing ribonucleoprotein. (212 aa)
	nup133	Nucleoporin 133. (1116 aa)
	ENSPFOP00000013080	Minichromosome maintenance complex component 3 associated protein. (1950 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	LOC103143640	Polymerase (DNA-directed), delta interacting protein 3. (488 aa)
	LOC103153884	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
	gle1	GLE1 RNA export mediator. (747 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000006365	ENSPFOP00000009319	ENSPFOP00000006365	ENSPFOP00000009319	PCI domain containing 2.	Zgc:153681.	0.739
ENSPFOP00000006365	ENSPFOP00000013080	ENSPFOP00000006365	ENSPFOP00000013080	PCI domain containing 2.	Minichromosome maintenance complex component 3 associated protein.	0.947
ENSPFOP00000006365	sarnp	ENSPFOP00000006365	ENSPFOP00000013589	PCI domain containing 2.	SAP domain containing ribonucleoprotein.	0.428
ENSPFOP00000009319	ENSPFOP00000006365	ENSPFOP00000009319	ENSPFOP00000006365	Zgc:153681.	PCI domain containing 2.	0.739
ENSPFOP00000009319	ENSPFOP00000013080	ENSPFOP00000009319	ENSPFOP00000013080	Zgc:153681.	Minichromosome maintenance complex component 3 associated protein.	0.973
ENSPFOP00000009319	IWS1	ENSPFOP00000009319	ENSPFOP00000009779	Zgc:153681.	Interacts with SUPT6H, CTD assembly factor 1.	0.438
ENSPFOP00000009319	LOC103143640	ENSPFOP00000009319	ENSPFOP00000028637	Zgc:153681.	Polymerase (DNA-directed), delta interacting protein 3.	0.963
ENSPFOP00000009319	LOC103150989	ENSPFOP00000009319	ENSPFOP00000007252	Zgc:153681.	Zgc:193690.	0.740
ENSPFOP00000009319	LOC103150989-2	ENSPFOP00000009319	ENSPFOP00000008772	Zgc:153681.	ATP-dependent RNA helicase DDX19B-like.	0.740
ENSPFOP00000009319	LOC103153884	ENSPFOP00000009319	ENSPFOP00000015573	Zgc:153681.	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	0.740
ENSPFOP00000009319	gle1	ENSPFOP00000009319	ENSPFOP00000013854	Zgc:153681.	GLE1 RNA export mediator.	0.901
ENSPFOP00000009319	nup133	ENSPFOP00000009319	ENSPFOP00000012587	Zgc:153681.	Nucleoporin 133.	0.950
ENSPFOP00000009319	nup93	ENSPFOP00000009319	ENSPFOP00000013150	Zgc:153681.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.941
ENSPFOP00000009319	sarnp	ENSPFOP00000009319	ENSPFOP00000013589	Zgc:153681.	SAP domain containing ribonucleoprotein.	0.689
ENSPFOP00000013080	ENSPFOP00000006365	ENSPFOP00000013080	ENSPFOP00000006365	Minichromosome maintenance complex component 3 associated protein.	PCI domain containing 2.	0.947
ENSPFOP00000013080	ENSPFOP00000009319	ENSPFOP00000013080	ENSPFOP00000009319	Minichromosome maintenance complex component 3 associated protein.	Zgc:153681.	0.973
ENSPFOP00000013080	LOC103143640	ENSPFOP00000013080	ENSPFOP00000028637	Minichromosome maintenance complex component 3 associated protein.	Polymerase (DNA-directed), delta interacting protein 3.	0.612
ENSPFOP00000013080	LOC103150989	ENSPFOP00000013080	ENSPFOP00000007252	Minichromosome maintenance complex component 3 associated protein.	Zgc:193690.	0.532
ENSPFOP00000013080	LOC103150989-2	ENSPFOP00000013080	ENSPFOP00000008772	Minichromosome maintenance complex component 3 associated protein.	ATP-dependent RNA helicase DDX19B-like.	0.532
ENSPFOP00000013080	LOC103153884	ENSPFOP00000013080	ENSPFOP00000015573	Minichromosome maintenance complex component 3 associated protein.	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast).	0.533