(33 nodes) Cytosolic large ribosomal subunit network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl6	Ribosomal protein L6. (259 aa)
	rpl7	Ribosomal protein L7. (245 aa)
	ENSPFOP00000013153	Mitochondrial ribosomal protein L1. (325 aa)
	rpl14	Ribosomal protein L14. (137 aa)
	LOC103134593	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (116 aa)
	ENSPFOP00000014654	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (73 aa)
	rpl37a	Ribosomal protein L37a. (92 aa)
	rpl30	Ribosomal protein L30. (116 aa)
	LOC103135927	60S ribosomal protein L7a. (266 aa)
	RPL5	Ribosomal protein L5b. (297 aa)
	RPL5-2	Ribosomal protein L5. (298 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
	rpl12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (167 aa)
	LOC103144500	Ribosomal protein L26. (145 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ENSPFOP00000001295	Ribosomal protein L10. (219 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	rpl28	Ribosomal protein L28. (137 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	LOC103139322	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	rpl35	Ribosomal protein L35. (123 aa)
	RPL7A	Ribosomal protein L7a. (266 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (248 aa)
	rpl18	Ribosomal protein L18. (188 aa)
	LOC103142141	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
	rpl4	Ribosomal protein L4. (368 aa)
	RPL27A	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	RPL3L	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (409 aa)
	LOC103144928	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
	ENSPFOP00000011356	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (61 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001295	ENSPFOP00000011356	ENSPFOP00000001295	ENSPFOP00000011356	Ribosomal protein L10.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
ENSPFOP00000001295	ENSPFOP00000013153	ENSPFOP00000001295	ENSPFOP00000013153	Ribosomal protein L10.	Mitochondrial ribosomal protein L1.	0.909
ENSPFOP00000001295	ENSPFOP00000014654	ENSPFOP00000001295	ENSPFOP00000014654	Ribosomal protein L10.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
ENSPFOP00000001295	LOC103134593	ENSPFOP00000001295	ENSPFOP00000013974	Ribosomal protein L10.	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.996
ENSPFOP00000001295	LOC103135927	ENSPFOP00000001295	ENSPFOP00000015940	Ribosomal protein L10.	60S ribosomal protein L7a.	0.996
ENSPFOP00000001295	LOC103139322	ENSPFOP00000001295	ENSPFOP00000004568	Ribosomal protein L10.	Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.996
ENSPFOP00000001295	LOC103142141	ENSPFOP00000001295	ENSPFOP00000008229	Ribosomal protein L10.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.993
ENSPFOP00000001295	LOC103144500	ENSPFOP00000001295	ENSPFOP00000000593	Ribosomal protein L10.	Ribosomal protein L26.	0.999
ENSPFOP00000001295	LOC103144928	ENSPFOP00000001295	ENSPFOP00000010156	Ribosomal protein L10.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.997
ENSPFOP00000001295	RPL19	ENSPFOP00000001295	ENSPFOP00000005283	Ribosomal protein L10.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.993
ENSPFOP00000001295	RPL27A	ENSPFOP00000001295	ENSPFOP00000008762	Ribosomal protein L10.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.999
ENSPFOP00000001295	RPL3L	ENSPFOP00000001295	ENSPFOP00000009642	Ribosomal protein L10.	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family.	0.997
ENSPFOP00000001295	RPL5	ENSPFOP00000001295	ENSPFOP00000016596	Ribosomal protein L10.	Ribosomal protein L5b.	0.997
ENSPFOP00000001295	RPL5-2	ENSPFOP00000001295	ENSPFOP00000017412	Ribosomal protein L10.	Ribosomal protein L5.	0.997
ENSPFOP00000001295	RPL7A	ENSPFOP00000001295	ENSPFOP00000007720	Ribosomal protein L10.	Ribosomal protein L7a.	0.996
ENSPFOP00000001295	rpl12	ENSPFOP00000001295	ENSPFOP00000024993	Ribosomal protein L10.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
ENSPFOP00000001295	rpl14	ENSPFOP00000001295	ENSPFOP00000013859	Ribosomal protein L10.	Ribosomal protein L14.	0.999
ENSPFOP00000001295	rpl17	ENSPFOP00000001295	ENSPFOP00000002846	Ribosomal protein L10.	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.999
ENSPFOP00000001295	rpl18	ENSPFOP00000001295	ENSPFOP00000008204	Ribosomal protein L10.	Ribosomal protein L18.	0.999
ENSPFOP00000001295	rpl21	ENSPFOP00000001295	ENSPFOP00000007848	Ribosomal protein L10.	Ribosomal protein L21.	0.999