44 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000001198	RAD23 homolog A, nucleotide excision repair protein a. (381 aa)
	LOC103140822	Proteasome 26S subunit, non-ATPase 4b. (375 aa)
	ENSPFOP00000021529	UBZ_FAAP20 domain-containing protein. (147 aa)
	LOC103130966	Proteasome 26S subunit, non-ATPase 4a. (372 aa)
	ENSPFOP00000020763	BRCA1/BRCA2-containing complex, subunit 3. (266 aa)
	mfsd11	Major facilitator superfamily domain containing 11. (454 aa)
	UBQLN1	Ubiquilin 1. (535 aa)
	ENSPFOP00000017948	Abraxas 2, BRISC complex subunit. (450 aa)
	LOC103133569	Zinc finger, RAN-binding domain containing 1b. (775 aa)
	ENSPFOP00000017410	Uncharacterized protein. (573 aa)
	LOC103134676	Uncharacterized protein. (763 aa)
	sqstm1	Sequestosome 1. (463 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (583 aa)
	zbtb1	Zinc finger and BTB domain containing 1. (680 aa)
	ubl7	Ubiquitin-like 7b (bone marrow stromal cell-derived). (379 aa)
	ENSPFOP00000015383	Zinc finger, RAN-binding domain containing 3. (1092 aa)
	ENSPFOP00000015291	SHANK-associated RH domain interacting protein. (435 aa)
	tab3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (573 aa)
	optn	Optineurin. (524 aa)
	parp10	Poly [ADP-ribose] polymerase. (1200 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (824 aa)
	ufd1	Ubiquitin recognition factor in ER associated degradation 1. (311 aa)
	LOC103143791	Uncharacterized protein. (446 aa)
	ENSPFOP00000011259	Si:dkey-181m9.8. (859 aa)
	ENSPFOP00000011005	BRISC and BRCA1 A complex member 2. (331 aa)
	ENSPFOP00000010953	Uncharacterized protein. (711 aa)
	mindy1	MINDY lysine 48 deubiquitinase 1. (571 aa)
	otud7b	OTU deubiquitinase 7B. (912 aa)
	ubqln4	Ubiquilin 4. (583 aa)
	ubxn1	UBX domain protein 1. (303 aa)
	rnf169	Ring finger protein 169. (574 aa)
	RAD23B	RAD23 homolog B, nucleotide excision repair protein. (406 aa)
	prpf8	Pre-mRNA processing factor 8. (2358 aa)
	rnf168	Ring finger protein 168. (431 aa)
	ENSPFOP00000004858	MINDY lysine 48 deubiquitinase 2. (525 aa)
	otud7a	OTU deubiquitinase 7A. (956 aa)
	LOC103154164	Zgc:136908; Belongs to the AAA ATPase family. (810 aa)
	ENSPFOP00000003978	TGF-beta activated kinase 1 (MAP3K7) binding protein 2. (700 aa)
	sprtn	SprT-like N-terminal domain. (547 aa)
	rad18	RAD18 E3 ubiquitin protein ligase. (493 aa)
	ENSPFOP00000002331	Abraxas 1, BRCA1 A complex subunit. (350 aa)
	rnf31	Ring finger protein 31. (1111 aa)
	bag6	BCL2 associated athanogene 6. (1207 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001198	ENSPFOP00000003978	ENSPFOP00000001198	ENSPFOP00000003978	RAD23 homolog A, nucleotide excision repair protein a.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.576
ENSPFOP00000001198	ENSPFOP00000010953	ENSPFOP00000001198	ENSPFOP00000010953	RAD23 homolog A, nucleotide excision repair protein a.	Uncharacterized protein.	0.430
ENSPFOP00000001198	ENSPFOP00000011259	ENSPFOP00000001198	ENSPFOP00000011259	RAD23 homolog A, nucleotide excision repair protein a.	Si:dkey-181m9.8.	0.560
ENSPFOP00000001198	ENSPFOP00000015291	ENSPFOP00000001198	ENSPFOP00000015291	RAD23 homolog A, nucleotide excision repair protein a.	SHANK-associated RH domain interacting protein.	0.487
ENSPFOP00000001198	ENSPFOP00000015383	ENSPFOP00000001198	ENSPFOP00000015383	RAD23 homolog A, nucleotide excision repair protein a.	Zinc finger, RAN-binding domain containing 3.	0.426
ENSPFOP00000001198	ENSPFOP00000020763	ENSPFOP00000001198	ENSPFOP00000020763	RAD23 homolog A, nucleotide excision repair protein a.	BRCA1/BRCA2-containing complex, subunit 3.	0.807
ENSPFOP00000001198	LOC103130966	ENSPFOP00000001198	ENSPFOP00000021261	RAD23 homolog A, nucleotide excision repair protein a.	Proteasome 26S subunit, non-ATPase 4a.	0.936
ENSPFOP00000001198	LOC103133569	ENSPFOP00000001198	ENSPFOP00000017919	RAD23 homolog A, nucleotide excision repair protein a.	Zinc finger, RAN-binding domain containing 1b.	0.430
ENSPFOP00000001198	LOC103140822	ENSPFOP00000001198	ENSPFOP00000027286	RAD23 homolog A, nucleotide excision repair protein a.	Proteasome 26S subunit, non-ATPase 4b.	0.936
ENSPFOP00000001198	LOC103154164	ENSPFOP00000001198	ENSPFOP00000004392	RAD23 homolog A, nucleotide excision repair protein a.	Zgc:136908; Belongs to the AAA ATPase family.	0.847
ENSPFOP00000001198	RAD23B	ENSPFOP00000001198	ENSPFOP00000010221	RAD23 homolog A, nucleotide excision repair protein a.	RAD23 homolog B, nucleotide excision repair protein.	0.924
ENSPFOP00000001198	UBQLN1	ENSPFOP00000001198	ENSPFOP00000018985	RAD23 homolog A, nucleotide excision repair protein a.	Ubiquilin 1.	0.726
ENSPFOP00000001198	bag6	ENSPFOP00000001198	ENSPFOP00000001363	RAD23 homolog A, nucleotide excision repair protein a.	BCL2 associated athanogene 6.	0.577
ENSPFOP00000001198	ikbkg	ENSPFOP00000001198	ENSPFOP00000016330	RAD23 homolog A, nucleotide excision repair protein a.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.635
ENSPFOP00000001198	optn	ENSPFOP00000001198	ENSPFOP00000013641	RAD23 homolog A, nucleotide excision repair protein a.	Optineurin.	0.635
ENSPFOP00000001198	otud7a	ENSPFOP00000001198	ENSPFOP00000004398	RAD23 homolog A, nucleotide excision repair protein a.	OTU deubiquitinase 7A.	0.430
ENSPFOP00000001198	otud7b	ENSPFOP00000001198	ENSPFOP00000010883	RAD23 homolog A, nucleotide excision repair protein a.	OTU deubiquitinase 7B.	0.430
ENSPFOP00000001198	rad18	ENSPFOP00000001198	ENSPFOP00000002669	RAD23 homolog A, nucleotide excision repair protein a.	RAD18 E3 ubiquitin protein ligase.	0.771
ENSPFOP00000001198	rnf168	ENSPFOP00000001198	ENSPFOP00000006224	RAD23 homolog A, nucleotide excision repair protein a.	Ring finger protein 168.	0.505
ENSPFOP00000001198	rnf169	ENSPFOP00000001198	ENSPFOP00000010486	RAD23 homolog A, nucleotide excision repair protein a.	Ring finger protein 169.	0.505