27 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ell2	Elongation factor, RNA polymerase II, 2. (672 aa)
	ccnt2	Cyclin T2; Belongs to the cyclin family. (692 aa)
	ell	Elongation factor RNA polymerase II. (645 aa)
	supt16h	SPT16 homolog, facilitates chromatin remodeling subunit. (1030 aa)
	LOC103153047	Zgc:154006. (517 aa)
	LOC103147853	Si:ch211-13k12.2. (602 aa)
	ENSPFOP00000006683	Si:ch211-13k12.2. (540 aa)
	ENSPFOP00000006865	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (531 aa)
	ENSPFOP00000007050	Bromodomain containing 4. (1573 aa)
	ENSPFOP00000009161	Uncharacterized protein. (1458 aa)
	ENSPFOP00000011510	Transcription elongation factor SPT5. (1004 aa)
	LOC103153363	Occludin; May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier. Belongs to the ELL/occludin family. (546 aa)
	LOC103148213	Cyclin T1; Belongs to the cyclin family. (684 aa)
	LOC103153429	Chromobox homolog 7a. (362 aa)
	LOC103141413	Cyclin T2b; Belongs to the cyclin family. (597 aa)
	LOC103155270	Uncharacterized protein. (627 aa)
	LOC103143382	Chromobox homolog 7b. (294 aa)
	LOC103135991	Uncharacterized protein. (599 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (631 aa)
	ENSPFOP00000018791	PWWP domain containing 2A. (768 aa)
	cdk13	Cyclin-dependent kinase 13. (1409 aa)
	ENSPFOP00000024829	Cyclin-dependent kinase 12. (1283 aa)
	ENSPFOP00000029180	Uncharacterized protein. (244 aa)
	pwwp2b	PWWP domain containing 2B. (624 aa)
	supt6h	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1753 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (532 aa)
	eapp	E2f-associated phosphoprotein. (290 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000006683	ENSPFOP00000011510	ENSPFOP00000006683	ENSPFOP00000011510	Si:ch211-13k12.2.	Transcription elongation factor SPT5.	0.797
ENSPFOP00000006683	ENSPFOP00000024829	ENSPFOP00000006683	ENSPFOP00000024829	Si:ch211-13k12.2.	Cyclin-dependent kinase 12.	0.540
ENSPFOP00000006683	LOC103141413	ENSPFOP00000006683	ENSPFOP00000015420	Si:ch211-13k12.2.	Cyclin T2b; Belongs to the cyclin family.	0.730
ENSPFOP00000006683	LOC103148213	ENSPFOP00000006683	ENSPFOP00000013627	Si:ch211-13k12.2.	Cyclin T1; Belongs to the cyclin family.	0.730
ENSPFOP00000006683	ccnt2	ENSPFOP00000006683	ENSPFOP00000000178	Si:ch211-13k12.2.	Cyclin T2; Belongs to the cyclin family.	0.730
ENSPFOP00000006683	cdk13	ENSPFOP00000006683	ENSPFOP00000019529	Si:ch211-13k12.2.	Cyclin-dependent kinase 13.	0.540
ENSPFOP00000006683	gtf2f1	ENSPFOP00000006683	ENSPFOP00000011064	Si:ch211-13k12.2.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.586
ENSPFOP00000006683	leo1	ENSPFOP00000006683	ENSPFOP00000017868	Si:ch211-13k12.2.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.404
ENSPFOP00000006683	supt16h	ENSPFOP00000006683	ENSPFOP00000002163	Si:ch211-13k12.2.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.701
ENSPFOP00000006683	supt6h	ENSPFOP00000006683	ENSPFOP00000011410	Si:ch211-13k12.2.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.630
ENSPFOP00000006865	ENSPFOP00000011510	ENSPFOP00000006865	ENSPFOP00000011510	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Transcription elongation factor SPT5.	0.979
ENSPFOP00000006865	ENSPFOP00000024829	ENSPFOP00000006865	ENSPFOP00000024829	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Cyclin-dependent kinase 12.	0.779
ENSPFOP00000006865	LOC103141413	ENSPFOP00000006865	ENSPFOP00000015420	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Cyclin T2b; Belongs to the cyclin family.	0.542
ENSPFOP00000006865	LOC103148213	ENSPFOP00000006865	ENSPFOP00000013627	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Cyclin T1; Belongs to the cyclin family.	0.542
ENSPFOP00000006865	ccnt2	ENSPFOP00000006865	ENSPFOP00000000178	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Cyclin T2; Belongs to the cyclin family.	0.542
ENSPFOP00000006865	cdk13	ENSPFOP00000006865	ENSPFOP00000019529	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Cyclin-dependent kinase 13.	0.779
ENSPFOP00000006865	gtf2f1	ENSPFOP00000006865	ENSPFOP00000011064	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.419
ENSPFOP00000006865	leo1	ENSPFOP00000006865	ENSPFOP00000017868	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSPFOP00000006865	supt16h	ENSPFOP00000006865	ENSPFOP00000002163	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	SPT16 homolog, facilitates chromatin remodeling subunit.	0.998
ENSPFOP00000006865	supt6h	ENSPFOP00000006865	ENSPFOP00000011410	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.972