(15 nodes) Regulation of lysosomal lumen pH network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000011880	Leucine-rich repeat kinase 2. (1882 aa)
	ENSPFOP00000026938	Uncharacterized protein. (206 aa)
	ENSPFOP00000025550	Battenin. (445 aa)
	LOC103151050	Granulin b. (746 aa)
	vps33a	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (600 aa)
	cln6	CLN6 transmembrane ER protein a. (299 aa)
	ENSPFOP00000027662	Uncharacterized protein. (277 aa)
	tmem165	GDT1 family protein. (302 aa)
	atp6ap2	ATPase H+ transporting accessory protein 2. (381 aa)
	tmem175	Transmembrane protein 175. (454 aa)
	CXorf21	Chromosome X open reading frame 21. (299 aa)
	ENSPFOP00000010263	Uncharacterized protein. (592 aa)
	ppt1	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile). (303 aa)
	LOC103134994	Uncharacterized protein. (283 aa)
	snapin	SNAP associated protein. (129 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000025550	cln6	ENSPFOP00000025550	ENSPFOP00000014693	Battenin.	CLN6 transmembrane ER protein a.	0.587
ENSPFOP00000025550	ppt1	ENSPFOP00000025550	ENSPFOP00000000874	Battenin.	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	0.639
cln6	ENSPFOP00000025550	ENSPFOP00000014693	ENSPFOP00000025550	CLN6 transmembrane ER protein a.	Battenin.	0.587
cln6	ppt1	ENSPFOP00000014693	ENSPFOP00000000874	CLN6 transmembrane ER protein a.	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	0.586
ppt1	ENSPFOP00000025550	ENSPFOP00000000874	ENSPFOP00000025550	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	Battenin.	0.639
ppt1	cln6	ENSPFOP00000000874	ENSPFOP00000014693	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	CLN6 transmembrane ER protein a.	0.586