16 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103145653	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (637 aa)
	taf10	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (186 aa)
	med1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1793 aa)
	taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (942 aa)
	taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (131 aa)
	ENSPFOP00000014349	TAFH domain-containing protein. (953 aa)
	LOC103146549	Helicase-like transcription factor. (961 aa)
	ENSPFOP00000009357	Protein S100; Belongs to the S-100 family. (113 aa)
	zbtb1	Zinc finger and BTB domain containing 1. (680 aa)
	taf13	TATA-box binding protein associated factor 13. (125 aa)
	C5AR2	Complement component 5a receptor 2. (350 aa)
	LOC103145803	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (850 aa)
	TAF4	TATA-box binding protein associated factor 4. (856 aa)
	ENSPFOP00000014732	TAFH domain-containing protein. (1080 aa)
	supt6h	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1753 aa)
	LOC103130849	TAFH domain-containing protein. (921 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000009357	LOC103146549	ENSPFOP00000009357	ENSPFOP00000014056	Protein S100; Belongs to the S-100 family.	Helicase-like transcription factor.	0.913
ENSPFOP00000014349	LOC103145653	ENSPFOP00000014349	ENSPFOP00000008650	TAFH domain-containing protein.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.965
ENSPFOP00000014349	LOC103145803	ENSPFOP00000014349	ENSPFOP00000005672	TAFH domain-containing protein.	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.911
ENSPFOP00000014349	TAF4	ENSPFOP00000014349	ENSPFOP00000010203	TAFH domain-containing protein.	TATA-box binding protein associated factor 4.	0.884
ENSPFOP00000014349	med1	ENSPFOP00000014349	ENSPFOP00000001635	TAFH domain-containing protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.520
ENSPFOP00000014349	taf10	ENSPFOP00000014349	ENSPFOP00000011539	TAFH domain-containing protein.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.948
ENSPFOP00000014349	taf12	ENSPFOP00000014349	ENSPFOP00000014528	TAFH domain-containing protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.965
ENSPFOP00000014349	taf13	ENSPFOP00000014349	ENSPFOP00000020700	TAFH domain-containing protein.	TATA-box binding protein associated factor 13.	0.947
ENSPFOP00000014349	taf3	ENSPFOP00000014349	ENSPFOP00000013193	TAFH domain-containing protein.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.925
ENSPFOP00000014732	LOC103145653	ENSPFOP00000014732	ENSPFOP00000008650	TAFH domain-containing protein.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.965
ENSPFOP00000014732	LOC103145803	ENSPFOP00000014732	ENSPFOP00000005672	TAFH domain-containing protein.	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.921
ENSPFOP00000014732	TAF4	ENSPFOP00000014732	ENSPFOP00000010203	TAFH domain-containing protein.	TATA-box binding protein associated factor 4.	0.743
ENSPFOP00000014732	med1	ENSPFOP00000014732	ENSPFOP00000001635	TAFH domain-containing protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.520
ENSPFOP00000014732	taf10	ENSPFOP00000014732	ENSPFOP00000011539	TAFH domain-containing protein.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.948
ENSPFOP00000014732	taf12	ENSPFOP00000014732	ENSPFOP00000014528	TAFH domain-containing protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.965
ENSPFOP00000014732	taf13	ENSPFOP00000014732	ENSPFOP00000020700	TAFH domain-containing protein.	TATA-box binding protein associated factor 13.	0.947
ENSPFOP00000014732	taf3	ENSPFOP00000014732	ENSPFOP00000013193	TAFH domain-containing protein.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.925
LOC103130849	LOC103145653	ENSPFOP00000000469	ENSPFOP00000008650	TAFH domain-containing protein.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.965
LOC103130849	LOC103145803	ENSPFOP00000000469	ENSPFOP00000005672	TAFH domain-containing protein.	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.911
LOC103130849	TAF4	ENSPFOP00000000469	ENSPFOP00000010203	TAFH domain-containing protein.	TATA-box binding protein associated factor 4.	0.884