(94 nodes) Transmembrane transporter binding network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cbarp	CACN subunit beta associated regulatory protein b. (900 aa)
	LOC103138669	Four and a half LIM domains 1b. (280 aa)
	LOC103146603	Uncharacterized protein. (224 aa)
	ENSPFOP00000004399	Peptidylprolyl isomerase. (146 aa)
	KCNAB1	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1. (397 aa)
	LOC103145295	Uncharacterized protein; Belongs to the MAGUK family. (575 aa)
	ENSPFOP00000006253	Sodium channel, voltage-gated, type III, beta. (216 aa)
	LOC103148953	Potassium voltage-gated channel, shaker-related subfamily, beta member 1 b. (399 aa)
	herpud1	Homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1. (410 aa)
	ENSPFOP00000007143	Ankyrin 1, erythrocytic b. (1490 aa)
	ENSPFOP00000007424	Ubiquitin-like domain-containing protein. (389 aa)
	LOC103143493	Sodium channel, voltage-gated, type I, beta b. (222 aa)
	ENSPFOP00000008281	Regulating synaptic membrane exocytosis 4. (275 aa)
	LOC103150954	Zgc:153993. (204 aa)
	ENSPFOP00000008741	Peptidase M60 domain-containing protein. (765 aa)
	ENSPFOP00000008817	Uncharacterized protein. (1319 aa)
	LOC103154632	Peptidase M60 domain-containing protein. (913 aa)
	LOC103154633	Peptidase M60 domain-containing protein. (910 aa)
	ENSPFOP00000009357	Protein S100; Belongs to the S-100 family. (113 aa)
	tcap	Titin-cap (telethonin). (179 aa)
	LRRC52	Si:dkey-52j6.3. (364 aa)
	ENSPFOP00000010742	A kinase (PRKA) anchor protein 6. (2000 aa)
	LOC103145207	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (255 aa)
	ENSPFOP00000011880	Leucine-rich repeat kinase 2. (1882 aa)
	scn4b	Sodium channel, voltage-gated, type IV, beta a. (245 aa)
	ENSPFOP00000012033	Potassium voltage-gated channel, subfamily G, member 4a; Belongs to the potassium channel family. (505 aa)
	ENSPFOP00000012222	KCNQ_channel domain-containing protein. (105 aa)
	LOC103150313	HERPUD family member 2. (326 aa)
	ENSPFOP00000013506	Uncharacterized protein. (1569 aa)
	ENSPFOP00000013611	ATP-binding cassette, sub-family C (CFTR/MRP), member 8. (1570 aa)
	fhl1	Four and a half LIM domains 1a. (297 aa)
	ENSPFOP00000013885	Uncharacterized protein. (338 aa)
	LOC103136366	Potassium voltage-gated channel subfamily A regulatory beta subunit 2. (367 aa)
	kcne4	Potassium voltage-gated channel, Isk-related family, member 4. (229 aa)
	ENSPFOP00000014318	Huntingtin. (3086 aa)
	cav1	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (180 aa)
	cib1	Calcium and integrin binding 1 (calmyrin). (189 aa)
	gopc	Golgi-associated PDZ and coiled-coil motif containing. (445 aa)
	ENSPFOP00000015620	Potassium voltage-gated channel, subfamily G, member 4b; Belongs to the potassium channel family. (516 aa)
	ENSPFOP00000015774	Uncharacterized protein. (660 aa)
	ENSPFOP00000015799	Uncharacterized protein. (351 aa)
	LOC103145510	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (326 aa)
	LOC103143150	Membrane protein, palmitoylated 2b (MAGUK p55 subfamily member 2); Belongs to the MAGUK family. (547 aa)
	ENSPFOP00000016382	Aldo_ket_red domain-containing protein. (309 aa)
	LOC103134656	Leucine rich repeat containing 38b. (291 aa)
	ENSPFOP00000017057	Calcium homeostasis endoplasmic reticulum protein. (903 aa)
	ENSPFOP00000017091	Uncharacterized protein. (1347 aa)
	ENSPFOP00000017093	Uncharacterized protein. (167 aa)
	RNF207	Ring finger protein 207. (631 aa)
	pacs2	Phosphofurin acidic cluster sorting protein 2. (891 aa)
	dcaf5	Actinin, alpha 1. (1213 aa)
	ENSPFOP00000017482	Uncharacterized protein. (1751 aa)
	ACTN4	Actinin alpha 4. (898 aa)
	LOC103142956	Homer scaffold protein 1b. (358 aa)
	ENSPFOP00000017929	ATP-binding cassette, sub-family C (CFTR/MRP), member 9. (1364 aa)
	kcnj8	Potassium inwardly-rectifying channel, subfamily J, member 8. (418 aa)
	ankdd1b	Ankyrin repeat and death domain containing 1B. (548 aa)
	ENSPFOP00000027172	ANK_REP_REGION domain-containing protein. (297 aa)
	LOC103137783	Translocator protein. (163 aa)
	LOC103137788	Translocator protein. (160 aa)
	ENSPFOP00000018387	Ankyrin 3a. (3694 aa)
	LOC103142589	Si:dkey-51e6.1. (143 aa)
	LOC103133606	Actinin, alpha 2b. (894 aa)
	ENSPFOP00000019165	Regulating synaptic membrane exocytosis 1a. (1501 aa)
	ENSPFOP00000019403	Uncharacterized protein; Belongs to the potassium channel family. (538 aa)
	LOC103137645	Uncharacterized protein. (921 aa)
	KCNAB3	Potassium voltage-gated channel subfamily A regulatory beta subunit 3. (432 aa)
	RIMS2	Regulating synaptic membrane exocytosis 2. (1481 aa)
	LOC103133988	Sodium channel, voltage-gated, type IV, beta b. (232 aa)
	LOC103129310	Ion_trans domain-containing protein; Belongs to the potassium channel family. (467 aa)
	LOC103130769	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (782 aa)
	LOC103154350	Membrane protein, palmitoylated 2a (MAGUK p55 subfamily member 2); Belongs to the MAGUK family. (553 aa)
	ENSPFOP00000020261	Potassium inwardly-rectifying channel, subfamily J, member 11. (381 aa)
	ENSPFOP00000021372	Sodium channel, voltage-gated, type III, beta. (191 aa)
	ENSPFOP00000022682	Actinin alpha 3b. (483 aa)
	ENSPFOP00000024361	Ion_trans domain-containing protein; Belongs to the potassium channel family. (580 aa)
	LOC103132641	Peptidase M60 domain-containing protein. (915 aa)
	ENSPFOP00000000479	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family. (253 aa)
	ENSPFOP00000001015	Phosphohistidine phosphatase 1. (141 aa)
	LOC103154709	Neuroplastin b. (390 aa)
	fkbp1b	Peptidylprolyl isomerase. (108 aa)
	LOC103145251	Regulating synaptic membrane exocytosis 3. (324 aa)
	LOC103132371	14 kDa phosphohistidine phosphatase-like. (128 aa)
	usp10	Ubiquitin carboxyl-terminal hydrolase. (876 aa)
	LOC103156120	Peptidylprolyl isomerase. (108 aa)
	LOC103150365	Membrane protein, palmitoylated 6a (MAGUK p55 subfamily member 6); Belongs to the MAGUK family. (552 aa)
	ENSPFOP00000002729	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (155 aa)
	PACS1	Phosphofurin acidic cluster sorting protein 1a. (906 aa)
	ENSPFOP00000003455	Si:ch73-330k17.3. (202 aa)
	LOC103150700	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (202 aa)
	LOC103155292	Sodium channel, voltage-gated, type I, beta a. (216 aa)
	LOC103151885	Ankyrin 1, erythrocytic a. (173 aa)
	bag2	BCL2 associated athanogene 2. (222 aa)
	LOC103130152	Uncharacterized protein. (278 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN4	ENSPFOP00000002729	ENSPFOP00000017666	ENSPFOP00000002729	Actinin alpha 4.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.486
ACTN4	dcaf5	ENSPFOP00000017666	ENSPFOP00000017407	Actinin alpha 4.	Actinin, alpha 1.	0.952
ACTN4	tcap	ENSPFOP00000017666	ENSPFOP00000009881	Actinin alpha 4.	Titin-cap (telethonin).	0.538
ENSPFOP00000000479	ENSPFOP00000003455	ENSPFOP00000000479	ENSPFOP00000003455	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Si:ch73-330k17.3.	0.444
ENSPFOP00000000479	ENSPFOP00000011880	ENSPFOP00000000479	ENSPFOP00000011880	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Leucine-rich repeat kinase 2.	0.438
ENSPFOP00000000479	LOC103142956	ENSPFOP00000000479	ENSPFOP00000017774	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Homer scaffold protein 1b.	0.529
ENSPFOP00000000479	LOC103145207	ENSPFOP00000000479	ENSPFOP00000011557	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.894
ENSPFOP00000000479	LOC103150954	ENSPFOP00000000479	ENSPFOP00000008424	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Zgc:153993.	0.656
ENSPFOP00000002729	ACTN4	ENSPFOP00000002729	ENSPFOP00000017666	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Actinin alpha 4.	0.486
ENSPFOP00000002729	ENSPFOP00000014318	ENSPFOP00000002729	ENSPFOP00000014318	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Huntingtin.	0.534
ENSPFOP00000002729	ENSPFOP00000022682	ENSPFOP00000002729	ENSPFOP00000022682	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Actinin alpha 3b.	0.486
ENSPFOP00000002729	LOC103130769	ENSPFOP00000002729	ENSPFOP00000019656	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.470
ENSPFOP00000002729	LOC103133606	ENSPFOP00000002729	ENSPFOP00000018668	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Actinin, alpha 2b.	0.486
ENSPFOP00000002729	LOC103150700	ENSPFOP00000002729	ENSPFOP00000028375	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.955
ENSPFOP00000002729	cav1	ENSPFOP00000002729	ENSPFOP00000014465	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.896
ENSPFOP00000002729	dcaf5	ENSPFOP00000002729	ENSPFOP00000017407	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Actinin, alpha 1.	0.486
ENSPFOP00000003455	ENSPFOP00000000479	ENSPFOP00000003455	ENSPFOP00000000479	Si:ch73-330k17.3.	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	0.444
ENSPFOP00000003455	LOC103145207	ENSPFOP00000003455	ENSPFOP00000011557	Si:ch73-330k17.3.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.444
ENSPFOP00000003455	LOC103145510	ENSPFOP00000003455	ENSPFOP00000015942	Si:ch73-330k17.3.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.444
ENSPFOP00000004399	LOC103146603	ENSPFOP00000004399	ENSPFOP00000003851	Peptidylprolyl isomerase.	Uncharacterized protein.	0.519