21 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103137288	Translocated promoter region b, nuclear basket protein. (2358 aa)
	sirt7	Sirtuin 7. (409 aa)
	PTPN14	Protein tyrosine phosphatase non-receptor type 14. (1253 aa)
	ENSPFOP00000003543	FCP1 homology domain-containing protein. (477 aa)
	ENSPFOP00000005078	BRCA1 associated RING domain 1. (745 aa)
	tpr	Translocated promoter region a, nuclear basket protein. (2481 aa)
	bag3	BCL2 associated athanogene 3. (515 aa)
	gas6	Uncharacterized protein. (650 aa)
	LOC103145207	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (255 aa)
	ENSPFOP00000012792	Rap guanine nucleotide exchange factor (GEF) 3. (835 aa)
	sirt6	Sirtuin 6. (390 aa)
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC103154927	Exportin 1 (CRM1 homolog, yeast) b. (1071 aa)
	rangap1	RAN GTPase activating protein 1a. (578 aa)
	LOC103145510	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (326 aa)
	uhmk1	U2AF homology motif (UHM) kinase 1. (437 aa)
	LOC103143341	Ran GTPase activating protein 1b. (564 aa)
	ENSPFOP00000000479	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family. (253 aa)
	LOC103143850	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 3. (403 aa)
	LOC103150752	Exportin 1 (CRM1 homolog, yeast) a. (1066 aa)
	ctdspl2	CTD small phosphatase like 2. (476 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000479	LOC103145207	ENSPFOP00000000479	ENSPFOP00000011557	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.894
ENSPFOP00000000479	LOC103150752	ENSPFOP00000000479	ENSPFOP00000001401	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Exportin 1 (CRM1 homolog, yeast) a.	0.557
ENSPFOP00000000479	LOC103154927	ENSPFOP00000000479	ENSPFOP00000013322	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Exportin 1 (CRM1 homolog, yeast) b.	0.557
ENSPFOP00000000479	bag3	ENSPFOP00000000479	ENSPFOP00000009704	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	BCL2 associated athanogene 3.	0.559
ENSPFOP00000005078	gas6	ENSPFOP00000005078	ENSPFOP00000010395	BRCA1 associated RING domain 1.	Uncharacterized protein.	0.491
ENSPFOP00000005078	sirt6	ENSPFOP00000005078	ENSPFOP00000012793	BRCA1 associated RING domain 1.	Sirtuin 6.	0.482
ENSPFOP00000005078	sirt7	ENSPFOP00000005078	ENSPFOP00000003160	BRCA1 associated RING domain 1.	Sirtuin 7.	0.482
LOC103137288	LOC103143341	ENSPFOP00000014127	ENSPFOP00000017011	Translocated promoter region b, nuclear basket protein.	Ran GTPase activating protein 1b.	0.665
LOC103137288	rangap1	ENSPFOP00000014127	ENSPFOP00000014314	Translocated promoter region b, nuclear basket protein.	RAN GTPase activating protein 1a.	0.665
LOC103137288	tpr	ENSPFOP00000014127	ENSPFOP00000006667	Translocated promoter region b, nuclear basket protein.	Translocated promoter region a, nuclear basket protein.	0.886
LOC103143341	LOC103137288	ENSPFOP00000017011	ENSPFOP00000014127	Ran GTPase activating protein 1b.	Translocated promoter region b, nuclear basket protein.	0.665
LOC103143341	LOC103150752	ENSPFOP00000017011	ENSPFOP00000001401	Ran GTPase activating protein 1b.	Exportin 1 (CRM1 homolog, yeast) a.	0.756
LOC103143341	LOC103154927	ENSPFOP00000017011	ENSPFOP00000013322	Ran GTPase activating protein 1b.	Exportin 1 (CRM1 homolog, yeast) b.	0.756
LOC103143341	rangap1	ENSPFOP00000017011	ENSPFOP00000014314	Ran GTPase activating protein 1b.	RAN GTPase activating protein 1a.	0.899
LOC103143341	tpr	ENSPFOP00000017011	ENSPFOP00000006667	Ran GTPase activating protein 1b.	Translocated promoter region a, nuclear basket protein.	0.665
LOC103145207	ENSPFOP00000000479	ENSPFOP00000011557	ENSPFOP00000000479	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	0.894
LOC103145207	LOC103145510	ENSPFOP00000011557	ENSPFOP00000015942	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.894
LOC103145207	LOC103150752	ENSPFOP00000011557	ENSPFOP00000001401	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Exportin 1 (CRM1 homolog, yeast) a.	0.557
LOC103145207	LOC103154927	ENSPFOP00000011557	ENSPFOP00000013322	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Exportin 1 (CRM1 homolog, yeast) b.	0.557
LOC103145207	bag3	ENSPFOP00000011557	ENSPFOP00000009704	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	BCL2 associated athanogene 3.	0.559