5 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	usp16	Ubiquitin carboxyl-terminal hydrolase 16; Specifically deubiquitinates 'Lys-120' of histone H2A (H2AK119Ub), a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Deubiquitination of histone H2A is a prerequisite for subsequent phosphorylation at 'Ser-11' of histone H3 (H3S10ph), and is required for chromosome segregation when cells enter into mitosis. Regulates Hox gene expression via histone H2A deubiquitination. Prefers nucleosomal substrates. Does not deubiquitinate histone H2B. (835 aa)
	ENSPFOP00000028108	Uncharacterized protein. (799 aa)
	ENSPFOP00000028055	Reverse transcriptase domain-containing protein. (432 aa)
	ENSPFOP00000021397	Reverse transcriptase domain-containing protein. (784 aa)
	ENSPFOP00000020763	BRCA1/BRCA2-containing complex, subunit 3. (266 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSPFOP00000020763	ENSPFOP00000021397	BRCA1/BRCA2-containing complex, subunit 3.	Reverse transcriptase domain-containing protein.	0.963
ENSPFOP00000020763	ENSPFOP00000028055	BRCA1/BRCA2-containing complex, subunit 3.	Reverse transcriptase domain-containing protein.	0.963
ENSPFOP00000020763	ENSPFOP00000028108	BRCA1/BRCA2-containing complex, subunit 3.	Uncharacterized protein.	0.975
ENSPFOP00000021397	ENSPFOP00000020763	Reverse transcriptase domain-containing protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.963
ENSPFOP00000028055	ENSPFOP00000020763	Reverse transcriptase domain-containing protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.963
ENSPFOP00000028108	ENSPFOP00000020763	Uncharacterized protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.975