(33 nodes) Regulation of miRNA transcription network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000004131	JunE proto-oncogene, AP-1 transcription factor subunit. (303 aa)
	ENSPFOP00000004408	Myocardin related transcription factor Ba. (982 aa)
	ENSPFOP00000005958	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family. (454 aa)
	LOC103132293	Nuclear factor of activated T cells 3a. (1083 aa)
	znf512b	Zinc finger protein 512B. (834 aa)
	ENSPFOP00000006420	SAP domain-containing protein. (693 aa)
	ENSPFOP00000008552	Transforming growth factor beta; Belongs to the TGF-beta family. (418 aa)
	ENSPFOP00000009530	Nerve growth factor receptor a (TNFR superfamily, member 16). (364 aa)
	srebf1	Sterol regulatory element binding transcription factor 1. (1184 aa)
	ENSPFOP00000010675	WT1 transcription factor a. (461 aa)
	LOC103143778	Myocardin related transcription factor Bb. (908 aa)
	LOC103146108	Kruppel-like factor 5 like. (432 aa)
	ENSPFOP00000003217	GATA binding protein 2a. (435 aa)
	GATA2	GATA binding protein 2. (462 aa)
	LOC103134743	Kruppel-like factor 5b. (431 aa)
	ENSPFOP00000012176	Nuclear factor of activated T cells 4. (368 aa)
	ppard	Peroxisome proliferator-activated receptor delta b. (508 aa)
	ENSPFOP00000014033	Zinc finger protein 512. (389 aa)
	il10	Interleukin 10. (181 aa)
	wt1	WT1 transcription factor b. (422 aa)
	LOC103143432	Myocardin related transcription factor Ab. (1249 aa)
	ENSPFOP00000018131	Progesterone immunomodulatory binding factor 1. (516 aa)
	LOC103149412	Mothers against decapentaplegic homolog. (503 aa)
	ENSPFOP00000019994	Mothers against decapentaplegic homolog. (511 aa)
	LOC103137045	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (324 aa)
	ENSPFOP00000024721	Nuclear factor of activated T cells 3b. (879 aa)
	SMAD4	Mothers against decapentaplegic homolog. (510 aa)
	ENSPFOP00000026078	Si:dkey-23i12.7. (134 aa)
	ENSPFOP00000026162	Serum response factor b. (601 aa)
	ENSPFOP00000027448	SAP domain-containing protein. (962 aa)
	fosl1	FOS-like antigen 1a. (337 aa)
	ENSPFOP00000029851	Uncharacterized protein. (362 aa)
	ENSPFOP00000030391	MADS-box domain-containing protein. (378 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000003217	ENSPFOP00000004131	ENSPFOP00000003217	ENSPFOP00000004131	GATA binding protein 2a.	JunE proto-oncogene, AP-1 transcription factor subunit.	0.615
ENSPFOP00000003217	ENSPFOP00000012176	ENSPFOP00000003217	ENSPFOP00000012176	GATA binding protein 2a.	Nuclear factor of activated T cells 4.	0.500
ENSPFOP00000003217	ENSPFOP00000024721	ENSPFOP00000003217	ENSPFOP00000024721	GATA binding protein 2a.	Nuclear factor of activated T cells 3b.	0.530
ENSPFOP00000003217	ENSPFOP00000026162	ENSPFOP00000003217	ENSPFOP00000026162	GATA binding protein 2a.	Serum response factor b.	0.697
ENSPFOP00000003217	ENSPFOP00000030391	ENSPFOP00000003217	ENSPFOP00000030391	GATA binding protein 2a.	MADS-box domain-containing protein.	0.697
ENSPFOP00000003217	LOC103132293	ENSPFOP00000003217	ENSPFOP00000006095	GATA binding protein 2a.	Nuclear factor of activated T cells 3a.	0.530
ENSPFOP00000003217	LOC103137045	ENSPFOP00000003217	ENSPFOP00000021020	GATA binding protein 2a.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.615
ENSPFOP00000004131	ENSPFOP00000003217	ENSPFOP00000004131	ENSPFOP00000003217	JunE proto-oncogene, AP-1 transcription factor subunit.	GATA binding protein 2a.	0.615
ENSPFOP00000004131	ENSPFOP00000018131	ENSPFOP00000004131	ENSPFOP00000018131	JunE proto-oncogene, AP-1 transcription factor subunit.	Progesterone immunomodulatory binding factor 1.	0.433
ENSPFOP00000004131	ENSPFOP00000019994	ENSPFOP00000004131	ENSPFOP00000019994	JunE proto-oncogene, AP-1 transcription factor subunit.	Mothers against decapentaplegic homolog.	0.472
ENSPFOP00000004131	ENSPFOP00000024721	ENSPFOP00000004131	ENSPFOP00000024721	JunE proto-oncogene, AP-1 transcription factor subunit.	Nuclear factor of activated T cells 3b.	0.444
ENSPFOP00000004131	ENSPFOP00000026078	ENSPFOP00000004131	ENSPFOP00000026078	JunE proto-oncogene, AP-1 transcription factor subunit.	Si:dkey-23i12.7.	0.896
ENSPFOP00000004131	GATA2	ENSPFOP00000004131	ENSPFOP00000003746	JunE proto-oncogene, AP-1 transcription factor subunit.	GATA binding protein 2.	0.615
ENSPFOP00000004131	LOC103132293	ENSPFOP00000004131	ENSPFOP00000006095	JunE proto-oncogene, AP-1 transcription factor subunit.	Nuclear factor of activated T cells 3a.	0.444
ENSPFOP00000004131	LOC103134743	ENSPFOP00000004131	ENSPFOP00000011938	JunE proto-oncogene, AP-1 transcription factor subunit.	Kruppel-like factor 5b.	0.433
ENSPFOP00000004131	LOC103146108	ENSPFOP00000004131	ENSPFOP00000000745	JunE proto-oncogene, AP-1 transcription factor subunit.	Kruppel-like factor 5 like.	0.433
ENSPFOP00000004131	LOC103149412	ENSPFOP00000004131	ENSPFOP00000019933	JunE proto-oncogene, AP-1 transcription factor subunit.	Mothers against decapentaplegic homolog.	0.472
ENSPFOP00000004131	SMAD4	ENSPFOP00000004131	ENSPFOP00000024750	JunE proto-oncogene, AP-1 transcription factor subunit.	Mothers against decapentaplegic homolog.	0.472
ENSPFOP00000004131	fosl1	ENSPFOP00000004131	ENSPFOP00000029793	JunE proto-oncogene, AP-1 transcription factor subunit.	FOS-like antigen 1a.	0.896
ENSPFOP00000004131	ppard	ENSPFOP00000004131	ENSPFOP00000013656	JunE proto-oncogene, AP-1 transcription factor subunit.	Peroxisome proliferator-activated receptor delta b.	0.439