14 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000000488	Uncharacterized protein. (207 aa)
	ENSPFOP00000026176	Ricin B-type lectin domain-containing protein. (319 aa)
	igf1	Insulin-like growth factor 1. (186 aa)
	ENSPFOP00000017787	PRKC, apoptosis, WT1, regulator. (344 aa)
	LOC103148683	Uncharacterized protein. (143 aa)
	ENSPFOP00000013841	Zgc:171927. (217 aa)
	ENSPFOP00000012635	ZRAB1B, member RAS oncogene family a. (214 aa)
	ncstn	Nicastrin. (701 aa)
	chp1	Calcineurin-like EF-hand protein 1. (195 aa)
	ENSPFOP00000009709	SCY domain-containing protein. (112 aa)
	pxylp1	2-phosphoxylose phosphatase 1; Belongs to the histidine acid phosphatase family. (523 aa)
	ENSPFOP00000006954	Uncharacterized protein. (170 aa)
	RAMP1	Receptor activity modifying protein 1. (121 aa)
	rab1a	Uncharacterized protein. (203 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000488	ENSPFOP00000013841	ENSPFOP00000000488	ENSPFOP00000013841	Uncharacterized protein.	Zgc:171927.	0.923
ENSPFOP00000000488	rab1a	ENSPFOP00000000488	ENSPFOP00000001756	Uncharacterized protein.	Uncharacterized protein.	0.922
ENSPFOP00000012635	ENSPFOP00000013841	ENSPFOP00000012635	ENSPFOP00000013841	ZRAB1B, member RAS oncogene family a.	Zgc:171927.	0.633
ENSPFOP00000013841	ENSPFOP00000000488	ENSPFOP00000013841	ENSPFOP00000000488	Zgc:171927.	Uncharacterized protein.	0.923
ENSPFOP00000013841	ENSPFOP00000012635	ENSPFOP00000013841	ENSPFOP00000012635	Zgc:171927.	ZRAB1B, member RAS oncogene family a.	0.633
ENSPFOP00000013841	rab1a	ENSPFOP00000013841	ENSPFOP00000001756	Zgc:171927.	Uncharacterized protein.	0.952
LOC103148683	RAMP1	ENSPFOP00000013863	ENSPFOP00000002730	Uncharacterized protein.	Receptor activity modifying protein 1.	0.901
RAMP1	LOC103148683	ENSPFOP00000002730	ENSPFOP00000013863	Receptor activity modifying protein 1.	Uncharacterized protein.	0.901
rab1a	ENSPFOP00000000488	ENSPFOP00000001756	ENSPFOP00000000488	Uncharacterized protein.	Uncharacterized protein.	0.922
rab1a	ENSPFOP00000013841	ENSPFOP00000001756	ENSPFOP00000013841	Uncharacterized protein.	Zgc:171927.	0.952