(16 nodes) Cytosolic large ribosomal subunit network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103144500	Ribosomal protein L26. (145 aa)
	ENSPFOP00000001295	Ribosomal protein L10. (219 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	rpl31	Ribosomal protein L31. (124 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
	LOC103142392	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	zcchc17	Zinc finger, CCHC domain containing 17. (248 aa)
	LOC103142141	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
	rpl4	Ribosomal protein L4. (368 aa)
	rpl35a	Ribosomal protein L35a. (110 aa)
	rpl9	Ribosomal protein L9. (192 aa)
	rpl32	Ribosomal protein L32. (135 aa)
	ENSPFOP00000011356	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (61 aa)
	rpl6	Ribosomal protein L6. (259 aa)
	rpl30	Ribosomal protein L30. (116 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001295	ENSPFOP00000011356	ENSPFOP00000001295	ENSPFOP00000011356	Ribosomal protein L10.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
ENSPFOP00000001295	LOC103142141	ENSPFOP00000001295	ENSPFOP00000008229	Ribosomal protein L10.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.993
ENSPFOP00000001295	LOC103142392	ENSPFOP00000001295	ENSPFOP00000005683	Ribosomal protein L10.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
ENSPFOP00000001295	LOC103144500	ENSPFOP00000001295	ENSPFOP00000000593	Ribosomal protein L10.	Ribosomal protein L26.	0.999
ENSPFOP00000001295	RPL19	ENSPFOP00000001295	ENSPFOP00000005283	Ribosomal protein L10.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.993
ENSPFOP00000001295	rpl18a	ENSPFOP00000001295	ENSPFOP00000002660	Ribosomal protein L10.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
ENSPFOP00000001295	rpl30	ENSPFOP00000001295	ENSPFOP00000014773	Ribosomal protein L10.	Ribosomal protein L30.	0.999
ENSPFOP00000001295	rpl31	ENSPFOP00000001295	ENSPFOP00000004984	Ribosomal protein L10.	Ribosomal protein L31.	0.999
ENSPFOP00000001295	rpl32	ENSPFOP00000001295	ENSPFOP00000010785	Ribosomal protein L10.	Ribosomal protein L32.	0.999
ENSPFOP00000001295	rpl35a	ENSPFOP00000001295	ENSPFOP00000009456	Ribosomal protein L10.	Ribosomal protein L35a.	0.999
ENSPFOP00000001295	rpl4	ENSPFOP00000001295	ENSPFOP00000008366	Ribosomal protein L10.	Ribosomal protein L4.	0.999
ENSPFOP00000001295	rpl6	ENSPFOP00000001295	ENSPFOP00000012654	Ribosomal protein L10.	Ribosomal protein L6.	0.999
ENSPFOP00000001295	rpl9	ENSPFOP00000001295	ENSPFOP00000010363	Ribosomal protein L10.	Ribosomal protein L9.	0.999
ENSPFOP00000001295	rplp1	ENSPFOP00000001295	ENSPFOP00000003189	Ribosomal protein L10.	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
ENSPFOP00000011356	ENSPFOP00000001295	ENSPFOP00000011356	ENSPFOP00000001295	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L10.	0.999
ENSPFOP00000011356	LOC103142141	ENSPFOP00000011356	ENSPFOP00000008229	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.996
ENSPFOP00000011356	LOC103142392	ENSPFOP00000011356	ENSPFOP00000005683	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
ENSPFOP00000011356	LOC103144500	ENSPFOP00000011356	ENSPFOP00000000593	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L26.	0.999
ENSPFOP00000011356	RPL19	ENSPFOP00000011356	ENSPFOP00000005283	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.996
ENSPFOP00000011356	rpl18a	ENSPFOP00000011356	ENSPFOP00000002660	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999