9 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000028950	Reverse transcriptase domain-containing protein. (609 aa)
	ENSPFOP00000002331	Abraxas 1, BRCA1 A complex subunit. (350 aa)
	brca1	Uncharacterized protein. (1316 aa)
	ENSPFOP00000005078	BRCA1 associated RING domain 1. (745 aa)
	ENSPFOP00000011005	BRISC and BRCA1 A complex member 2. (331 aa)
	ENSPFOP00000021397	Reverse transcriptase domain-containing protein. (784 aa)
	ENSPFOP00000023229	Uncharacterized protein. (235 aa)
	ENSPFOP00000028055	Reverse transcriptase domain-containing protein. (432 aa)
	ENSPFOP00000028108	Uncharacterized protein. (799 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000002331	ENSPFOP00000005078	ENSPFOP00000002331	ENSPFOP00000005078	Abraxas 1, BRCA1 A complex subunit.	BRCA1 associated RING domain 1.	0.589
ENSPFOP00000002331	ENSPFOP00000011005	ENSPFOP00000002331	ENSPFOP00000011005	Abraxas 1, BRCA1 A complex subunit.	BRISC and BRCA1 A complex member 2.	0.666
ENSPFOP00000002331	ENSPFOP00000021397	ENSPFOP00000002331	ENSPFOP00000021397	Abraxas 1, BRCA1 A complex subunit.	Reverse transcriptase domain-containing protein.	0.540
ENSPFOP00000002331	ENSPFOP00000023229	ENSPFOP00000002331	ENSPFOP00000023229	Abraxas 1, BRCA1 A complex subunit.	Uncharacterized protein.	0.467
ENSPFOP00000002331	ENSPFOP00000028055	ENSPFOP00000002331	ENSPFOP00000028055	Abraxas 1, BRCA1 A complex subunit.	Reverse transcriptase domain-containing protein.	0.540
ENSPFOP00000002331	ENSPFOP00000028108	ENSPFOP00000002331	ENSPFOP00000028108	Abraxas 1, BRCA1 A complex subunit.	Uncharacterized protein.	0.598
ENSPFOP00000002331	ENSPFOP00000028950	ENSPFOP00000002331	ENSPFOP00000028950	Abraxas 1, BRCA1 A complex subunit.	Reverse transcriptase domain-containing protein.	0.498
ENSPFOP00000002331	brca1	ENSPFOP00000002331	ENSPFOP00000004695	Abraxas 1, BRCA1 A complex subunit.	Uncharacterized protein.	0.899
ENSPFOP00000005078	ENSPFOP00000002331	ENSPFOP00000005078	ENSPFOP00000002331	BRCA1 associated RING domain 1.	Abraxas 1, BRCA1 A complex subunit.	0.589
ENSPFOP00000005078	ENSPFOP00000011005	ENSPFOP00000005078	ENSPFOP00000011005	BRCA1 associated RING domain 1.	BRISC and BRCA1 A complex member 2.	0.881
ENSPFOP00000005078	ENSPFOP00000021397	ENSPFOP00000005078	ENSPFOP00000021397	BRCA1 associated RING domain 1.	Reverse transcriptase domain-containing protein.	0.889
ENSPFOP00000005078	ENSPFOP00000023229	ENSPFOP00000005078	ENSPFOP00000023229	BRCA1 associated RING domain 1.	Uncharacterized protein.	0.792
ENSPFOP00000005078	ENSPFOP00000028055	ENSPFOP00000005078	ENSPFOP00000028055	BRCA1 associated RING domain 1.	Reverse transcriptase domain-containing protein.	0.889
ENSPFOP00000005078	ENSPFOP00000028108	ENSPFOP00000005078	ENSPFOP00000028108	BRCA1 associated RING domain 1.	Uncharacterized protein.	0.889
ENSPFOP00000005078	ENSPFOP00000028950	ENSPFOP00000005078	ENSPFOP00000028950	BRCA1 associated RING domain 1.	Reverse transcriptase domain-containing protein.	0.871
ENSPFOP00000005078	brca1	ENSPFOP00000005078	ENSPFOP00000004695	BRCA1 associated RING domain 1.	Uncharacterized protein.	0.999
ENSPFOP00000011005	ENSPFOP00000002331	ENSPFOP00000011005	ENSPFOP00000002331	BRISC and BRCA1 A complex member 2.	Abraxas 1, BRCA1 A complex subunit.	0.666
ENSPFOP00000011005	ENSPFOP00000005078	ENSPFOP00000011005	ENSPFOP00000005078	BRISC and BRCA1 A complex member 2.	BRCA1 associated RING domain 1.	0.881
ENSPFOP00000011005	ENSPFOP00000021397	ENSPFOP00000011005	ENSPFOP00000021397	BRISC and BRCA1 A complex member 2.	Reverse transcriptase domain-containing protein.	0.963
ENSPFOP00000011005	ENSPFOP00000023229	ENSPFOP00000011005	ENSPFOP00000023229	BRISC and BRCA1 A complex member 2.	Uncharacterized protein.	0.947