(31 nodes) AMP-dependent synthetase/ligase domain network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000004814	Uncharacterized protein. (592 aa)
	LOC103152202	AMP-binding domain-containing protein. (722 aa)
	slc27a1	Solute carrier family 27 member 1a. (648 aa)
	ENSPFOP00000005832	Uncharacterized protein. (632 aa)
	ACSL1	Acyl-CoA synthetase long chain family member 1. (366 aa)
	ACSF3	Acyl-CoA synthetase family member 3. (589 aa)
	acss1	Acetyl-coenzyme A synthetase. (680 aa)
	LOC103141998	AMP-binding domain-containing protein. (699 aa)
	acsl4	Acyl-CoA synthetase long chain family member 4a. (665 aa)
	LOC103148966	Acyl-CoA synthetase long chain family member 3b. (709 aa)
	aacs	Acetoacetyl-CoA synthetase. (676 aa)
	ENSPFOP00000009233	Uncharacterized protein. (1262 aa)
	LOC103145801	Acyl-CoA synthetase long chain family member 2. (699 aa)
	ENSPFOP00000012978	Disco-interacting protein 2 homolog Ba. (1552 aa)
	ENSPFOP00000014137	Uncharacterized protein. (730 aa)
	acsbg2	Acyl-CoA synthetase bubblegum family member 2. (752 aa)
	acsl5	Acyl-CoA synthetase long chain family member 5. (683 aa)
	ENSPFOP00000017548	Acyl-CoA synthetase short chain family member 3. (702 aa)
	LOC103143583	Uncharacterized protein. (621 aa)
	LOC103143584	Solute carrier family 27 member 2a. (619 aa)
	LOC103152407	Acyl-CoA synthetase family member 2. (611 aa)
	dip2a	Disco-interacting protein 2 homolog A. (1584 aa)
	slc27a4	Solute carrier family 27 member 4. (643 aa)
	ACSS1	Acyl-CoA synthetase short chain family member 1. (322 aa)
	ENSPFOP00000028053	AMP-binding domain-containing protein. (239 aa)
	ENSPFOP00000003386	Disco-interacting protein 2 homolog Cb. (1564 aa)
	acsl1	Acyl-CoA synthetase long chain family member 1a. (698 aa)
	ENSPFOP00000002285	Acetyl-coenzyme A synthetase. (746 aa)
	LOC103154146	Solute carrier family 27 member 1. (650 aa)
	LOC103132135	Acyl-CoA synthetase short chain family member 2. (695 aa)
	ENSPFOP00000030320	Disco-interacting protein 2 homolog Bb. (1583 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACSF3	ACSL1	ENSPFOP00000006614	ENSPFOP00000006316	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase long chain family member 1.	0.592
ACSF3	ACSS1	ENSPFOP00000006614	ENSPFOP00000027140	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase short chain family member 1.	0.681
ACSF3	ENSPFOP00000002285	ENSPFOP00000006614	ENSPFOP00000002285	Acyl-CoA synthetase family member 3.	Acetyl-coenzyme A synthetase.	0.681
ACSF3	ENSPFOP00000014137	ENSPFOP00000006614	ENSPFOP00000014137	Acyl-CoA synthetase family member 3.	Uncharacterized protein.	0.571
ACSF3	ENSPFOP00000017548	ENSPFOP00000006614	ENSPFOP00000017548	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase short chain family member 3.	0.681
ACSF3	ENSPFOP00000028053	ENSPFOP00000006614	ENSPFOP00000028053	Acyl-CoA synthetase family member 3.	AMP-binding domain-containing protein.	0.814
ACSF3	LOC103132135	ENSPFOP00000006614	ENSPFOP00000000398	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase short chain family member 2.	0.681
ACSF3	LOC103141998	ENSPFOP00000006614	ENSPFOP00000007106	Acyl-CoA synthetase family member 3.	AMP-binding domain-containing protein.	0.592
ACSF3	LOC103145801	ENSPFOP00000006614	ENSPFOP00000010317	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase long chain family member 2.	0.592
ACSF3	LOC103148966	ENSPFOP00000006614	ENSPFOP00000007675	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase long chain family member 3b.	0.571
ACSF3	LOC103152202	ENSPFOP00000006614	ENSPFOP00000005114	Acyl-CoA synthetase family member 3.	AMP-binding domain-containing protein.	0.592
ACSF3	LOC103154146	ENSPFOP00000006614	ENSPFOP00000001406	Acyl-CoA synthetase family member 3.	Solute carrier family 27 member 1.	0.667
ACSF3	aacs	ENSPFOP00000006614	ENSPFOP00000008946	Acyl-CoA synthetase family member 3.	Acetoacetyl-CoA synthetase.	0.680
ACSF3	acsbg2	ENSPFOP00000006614	ENSPFOP00000014634	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase bubblegum family member 2.	0.592
ACSF3	acsl1	ENSPFOP00000006614	ENSPFOP00000002363	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase long chain family member 1a.	0.592
ACSF3	acsl4	ENSPFOP00000006614	ENSPFOP00000007603	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase long chain family member 4a.	0.571
ACSF3	acsl5	ENSPFOP00000006614	ENSPFOP00000017243	Acyl-CoA synthetase family member 3.	Acyl-CoA synthetase long chain family member 5.	0.592
ACSF3	acss1	ENSPFOP00000006614	ENSPFOP00000007093	Acyl-CoA synthetase family member 3.	Acetyl-coenzyme A synthetase.	0.681
ACSL1	ACSF3	ENSPFOP00000006316	ENSPFOP00000006614	Acyl-CoA synthetase long chain family member 1.	Acyl-CoA synthetase family member 3.	0.592
ACSL1	ENSPFOP00000003386	ENSPFOP00000006316	ENSPFOP00000003386	Acyl-CoA synthetase long chain family member 1.	Disco-interacting protein 2 homolog Cb.	0.555