5 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000015888	AF4/FMR2 family, member 3. (1131 aa)
	ENSPFOP00000004364	Uncharacterized protein. (380 aa)
	ENSPFOP00000004457	AF4/FMR2 family, member 2. (875 aa)
	ENSPFOP00000004460	Uncharacterized protein. (1108 aa)
	aff4	AF4/FMR2 family, member 4. (1102 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000004364	ENSPFOP00000004457	ENSPFOP00000004364	ENSPFOP00000004457	Uncharacterized protein.	AF4/FMR2 family, member 2.	0.863
ENSPFOP00000004457	ENSPFOP00000004364	ENSPFOP00000004457	ENSPFOP00000004364	AF4/FMR2 family, member 2.	Uncharacterized protein.	0.863
ENSPFOP00000004460	aff4	ENSPFOP00000004460	ENSPFOP00000007272	Uncharacterized protein.	AF4/FMR2 family, member 4.	0.712
ENSPFOP00000015888	aff4	ENSPFOP00000015888	ENSPFOP00000007272	AF4/FMR2 family, member 3.	AF4/FMR2 family, member 4.	0.459
aff4	ENSPFOP00000004460	ENSPFOP00000007272	ENSPFOP00000004460	AF4/FMR2 family, member 4.	Uncharacterized protein.	0.712
aff4	ENSPFOP00000015888	ENSPFOP00000007272	ENSPFOP00000015888	AF4/FMR2 family, member 4.	AF4/FMR2 family, member 3.	0.459