(7 nodes) Anaphylatoxin, complement system network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103156320	Uncharacterized protein. (1654 aa)
	c5	Uncharacterized protein. (1686 aa)
	ENSPFOP00000006220	Uncharacterized protein. (1662 aa)
	LOC103153241	Complement component c3b, tandem duplicate 2. (1754 aa)
	ENSPFOP00000003633	Uncharacterized protein. (1112 aa)
	LOC103133105	Uncharacterized protein. (1035 aa)
	LOC103150407	Complement 4B (Chido blood group). (1708 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000003633	c5	ENSPFOP00000003633	ENSPFOP00000008866	Uncharacterized protein.	Uncharacterized protein.	0.660
ENSPFOP00000006220	c5	ENSPFOP00000006220	ENSPFOP00000008866	Uncharacterized protein.	Uncharacterized protein.	0.660
LOC103133105	c5	ENSPFOP00000024983	ENSPFOP00000008866	Uncharacterized protein.	Uncharacterized protein.	0.874
LOC103150407	c5	ENSPFOP00000010657	ENSPFOP00000008866	Complement 4B (Chido blood group).	Uncharacterized protein.	0.660
LOC103153241	c5	ENSPFOP00000006129	ENSPFOP00000008866	Complement component c3b, tandem duplicate 2.	Uncharacterized protein.	0.660
LOC103156320	c5	ENSPFOP00000018837	ENSPFOP00000008866	Uncharacterized protein.	Uncharacterized protein.	0.874
c5	ENSPFOP00000003633	ENSPFOP00000008866	ENSPFOP00000003633	Uncharacterized protein.	Uncharacterized protein.	0.660
c5	ENSPFOP00000006220	ENSPFOP00000008866	ENSPFOP00000006220	Uncharacterized protein.	Uncharacterized protein.	0.660
c5	LOC103133105	ENSPFOP00000008866	ENSPFOP00000024983	Uncharacterized protein.	Uncharacterized protein.	0.874
c5	LOC103150407	ENSPFOP00000008866	ENSPFOP00000010657	Uncharacterized protein.	Complement 4B (Chido blood group).	0.660
c5	LOC103153241	ENSPFOP00000008866	ENSPFOP00000006129	Uncharacterized protein.	Complement component c3b, tandem duplicate 2.	0.660
c5	LOC103156320	ENSPFOP00000008866	ENSPFOP00000018837	Uncharacterized protein.	Uncharacterized protein.	0.874