(13 nodes) Ubiquitin domain network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps27a	Ribosomal protein S27a. (156 aa)
	ENSPFOP00000029102	Uncharacterized protein. (137 aa)
	LOC103142872	ISG15 ubiquitin like modifier. (155 aa)
	LOC103142874	Uncharacterized protein. (155 aa)
	UHRF2	Ubiquitin like with PHD and ring finger domains 2. (922 aa)
	ubb	Ubiquitin B. (259 aa)
	ubtd1	Ubiquitin domain containing 1b. (242 aa)
	LOC103138412	NEDD8 ubiquitin like modifier, like. (90 aa)
	LOC103138959	Ubiquitin domain containing 2. (272 aa)
	LOC103132215	Ubiquitin-like domain-containing protein. (331 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	zfand4	Zinc finger, AN1-type domain 4. (723 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000029102	LOC103132215	ENSPFOP00000029102	ENSPFOP00000004063	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.830
ENSPFOP00000029102	LOC103138412	ENSPFOP00000029102	ENSPFOP00000016733	Uncharacterized protein.	NEDD8 ubiquitin like modifier, like.	0.734
ENSPFOP00000029102	fau	ENSPFOP00000029102	ENSPFOP00000003766	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.857
ENSPFOP00000029102	rps27a	ENSPFOP00000029102	ENSPFOP00000013174	Uncharacterized protein.	Ribosomal protein S27a.	0.967
ENSPFOP00000029102	uba52	ENSPFOP00000029102	ENSPFOP00000001094	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.972
ENSPFOP00000029102	ubb	ENSPFOP00000029102	ENSPFOP00000018757	Uncharacterized protein.	Ubiquitin B.	0.962
ENSPFOP00000029102	zfand4	ENSPFOP00000029102	ENSPFOP00000002345	Uncharacterized protein.	Zinc finger, AN1-type domain 4.	0.491
LOC103132215	ENSPFOP00000029102	ENSPFOP00000004063	ENSPFOP00000029102	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.830
LOC103132215	LOC103138412	ENSPFOP00000004063	ENSPFOP00000016733	Ubiquitin-like domain-containing protein.	NEDD8 ubiquitin like modifier, like.	0.939
LOC103132215	LOC103142872	ENSPFOP00000004063	ENSPFOP00000028569	Ubiquitin-like domain-containing protein.	ISG15 ubiquitin like modifier.	0.830
LOC103132215	LOC103142874	ENSPFOP00000004063	ENSPFOP00000022587	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.830
LOC103132215	fau	ENSPFOP00000004063	ENSPFOP00000003766	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
LOC103132215	uba52	ENSPFOP00000004063	ENSPFOP00000001094	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.983
LOC103132215	ubb	ENSPFOP00000004063	ENSPFOP00000018757	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.830
LOC103132215	zfand4	ENSPFOP00000004063	ENSPFOP00000002345	Ubiquitin-like domain-containing protein.	Zinc finger, AN1-type domain 4.	0.999
LOC103138412	ENSPFOP00000029102	ENSPFOP00000016733	ENSPFOP00000029102	NEDD8 ubiquitin like modifier, like.	Uncharacterized protein.	0.734
LOC103138412	LOC103132215	ENSPFOP00000016733	ENSPFOP00000004063	NEDD8 ubiquitin like modifier, like.	Ubiquitin-like domain-containing protein.	0.939
LOC103138412	LOC103142872	ENSPFOP00000016733	ENSPFOP00000028569	NEDD8 ubiquitin like modifier, like.	ISG15 ubiquitin like modifier.	0.744
LOC103138412	LOC103142874	ENSPFOP00000016733	ENSPFOP00000022587	NEDD8 ubiquitin like modifier, like.	Uncharacterized protein.	0.744
LOC103138412	fau	ENSPFOP00000016733	ENSPFOP00000003766	NEDD8 ubiquitin like modifier, like.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.919