(14 nodes) Alpha-macroglobulin, receptor-binding domain superfamily network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	c5	Uncharacterized protein. (1686 aa)
	ENSPFOP00000026308	Uncharacterized protein. (1444 aa)
	LOC103133105	Uncharacterized protein. (1035 aa)
	ENSPFOP00000021850	A2M_recep domain-containing protein. (624 aa)
	LOC103156320	Uncharacterized protein. (1654 aa)
	LOC103150407	Complement 4B (Chido blood group). (1708 aa)
	ENSPFOP00000017451	Uncharacterized protein. (1464 aa)
	ENSPFOP00000018715	C3 and PZP like alpha-2-macroglobulin domain containing 8. (1706 aa)
	LOC103153241	Complement component c3b, tandem duplicate 2. (1754 aa)
	CD109	CD109 molecule. (1394 aa)
	ENSPFOP00000006220	Uncharacterized protein. (1662 aa)
	ENSPFOP00000006251	CD109 molecule. (1437 aa)
	LOC103152778	Uncharacterized protein. (1476 aa)
	ENSPFOP00000005674	Uncharacterized protein. (1430 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000006220	c5	ENSPFOP00000006220	ENSPFOP00000008866	Uncharacterized protein.	Uncharacterized protein.	0.660
LOC103133105	c5	ENSPFOP00000024983	ENSPFOP00000008866	Uncharacterized protein.	Uncharacterized protein.	0.874
LOC103150407	c5	ENSPFOP00000010657	ENSPFOP00000008866	Complement 4B (Chido blood group).	Uncharacterized protein.	0.660
LOC103153241	c5	ENSPFOP00000006129	ENSPFOP00000008866	Complement component c3b, tandem duplicate 2.	Uncharacterized protein.	0.660
LOC103156320	c5	ENSPFOP00000018837	ENSPFOP00000008866	Uncharacterized protein.	Uncharacterized protein.	0.874
c5	ENSPFOP00000006220	ENSPFOP00000008866	ENSPFOP00000006220	Uncharacterized protein.	Uncharacterized protein.	0.660
c5	LOC103133105	ENSPFOP00000008866	ENSPFOP00000024983	Uncharacterized protein.	Uncharacterized protein.	0.874
c5	LOC103150407	ENSPFOP00000008866	ENSPFOP00000010657	Uncharacterized protein.	Complement 4B (Chido blood group).	0.660
c5	LOC103153241	ENSPFOP00000008866	ENSPFOP00000006129	Uncharacterized protein.	Complement component c3b, tandem duplicate 2.	0.660
c5	LOC103156320	ENSPFOP00000008866	ENSPFOP00000018837	Uncharacterized protein.	Uncharacterized protein.	0.874