(35 nodes) ArfGAP domain superfamily network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	git1	G protein-coupled receptor kinase interacting ArfGAP 1. (774 aa)
	ENSPFOP00000010121	Zgc:114045. (248 aa)
	ENSPFOP00000010206	Zgc:162872. (748 aa)
	ARAP1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1. (1598 aa)
	asap2	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2a. (982 aa)
	arfgap3	ADP-ribosylation factor GTPase activating protein 3. (532 aa)
	arap2	Uncharacterized protein. (1652 aa)
	LOC103137701	Uncharacterized protein. (380 aa)
	ENSPFOP00000012413	G protein-coupled receptor kinase interacting ArfGAP 2a. (723 aa)
	agfg1	ArfGAP with FG repeats 1a. (593 aa)
	LOC103141720	ArfGAP with dual PH domains 2. (378 aa)
	asap1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b. (1098 aa)
	agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3. (926 aa)
	LOC103136463	Uncharacterized protein. (377 aa)
	ENSPFOP00000016185	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2b. (1082 aa)
	arfgap1	ADP-ribosylation factor GTPase activating protein 1. (415 aa)
	ENSPFOP00000017555	Un-named sa1614. (1010 aa)
	ADAP1	ArfGAP with dual PH domains 1. (376 aa)
	arfgap2	ADP-ribosylation factor GTPase activating protein 2. (547 aa)
	ENSPFOP00000019023	Uncharacterized protein. (1139 aa)
	LOC103137613	Small ArfGAP 1. (420 aa)
	ENSPFOP00000019714	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2. (914 aa)
	LOC103149222	G protein-coupled receptor kinase interacting ArfGAP 2b. (737 aa)
	ENSPFOP00000021921	ArfGAP with FG repeats 1b. (306 aa)
	acap2	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2. (837 aa)
	ENSPFOP00000029108	Arf-GAP domain-containing protein. (452 aa)
	LOC103139499	Uncharacterized protein. (828 aa)
	LOC103145250	Arf-GAP domain-containing protein. (477 aa)
	ENSPFOP00000002349	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3. (1703 aa)
	LOC103144225	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3. (1005 aa)
	LOC103131348	Arf-GAP domain-containing protein. (458 aa)
	ENSPFOP00000004848	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1. (864 aa)
	ENSPFOP00000008428	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a. (794 aa)
	LOC103140988	Uncharacterized protein. (377 aa)
	ENSPFOP00000010085	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1. (800 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADAP1	ARAP1	ENSPFOP00000017860	ENSPFOP00000010320	ArfGAP with dual PH domains 1.	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1.	0.507
ADAP1	ENSPFOP00000002349	ENSPFOP00000017860	ENSPFOP00000002349	ArfGAP with dual PH domains 1.	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3.	0.507
ADAP1	ENSPFOP00000004848	ENSPFOP00000017860	ENSPFOP00000004848	ArfGAP with dual PH domains 1.	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1.	0.492
ADAP1	ENSPFOP00000008428	ENSPFOP00000017860	ENSPFOP00000008428	ArfGAP with dual PH domains 1.	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a.	0.535
ADAP1	ENSPFOP00000010085	ENSPFOP00000017860	ENSPFOP00000010085	ArfGAP with dual PH domains 1.	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1.	0.535
ADAP1	ENSPFOP00000010206	ENSPFOP00000017860	ENSPFOP00000010206	ArfGAP with dual PH domains 1.	Zgc:162872.	0.535
ADAP1	ENSPFOP00000012413	ENSPFOP00000017860	ENSPFOP00000012413	ArfGAP with dual PH domains 1.	G protein-coupled receptor kinase interacting ArfGAP 2a.	0.496
ADAP1	ENSPFOP00000016185	ENSPFOP00000017860	ENSPFOP00000016185	ArfGAP with dual PH domains 1.	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2b.	0.535
ADAP1	ENSPFOP00000017555	ENSPFOP00000017860	ENSPFOP00000017555	ArfGAP with dual PH domains 1.	Un-named sa1614.	0.535
ADAP1	ENSPFOP00000019023	ENSPFOP00000017860	ENSPFOP00000019023	ArfGAP with dual PH domains 1.	Uncharacterized protein.	0.507
ADAP1	ENSPFOP00000019714	ENSPFOP00000017860	ENSPFOP00000019714	ArfGAP with dual PH domains 1.	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.	0.492
ADAP1	LOC103139499	ENSPFOP00000017860	ENSPFOP00000000393	ArfGAP with dual PH domains 1.	Uncharacterized protein.	0.535
ADAP1	LOC103144225	ENSPFOP00000017860	ENSPFOP00000004133	ArfGAP with dual PH domains 1.	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3.	0.593
ADAP1	LOC103149222	ENSPFOP00000017860	ENSPFOP00000019920	ArfGAP with dual PH domains 1.	G protein-coupled receptor kinase interacting ArfGAP 2b.	0.496
ADAP1	acap2	ENSPFOP00000017860	ENSPFOP00000024908	ArfGAP with dual PH domains 1.	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2.	0.535
ADAP1	agap3	ENSPFOP00000017860	ENSPFOP00000013944	ArfGAP with dual PH domains 1.	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3.	0.492
ADAP1	arap2	ENSPFOP00000017860	ENSPFOP00000011655	ArfGAP with dual PH domains 1.	Uncharacterized protein.	0.507
ADAP1	arfgap1	ENSPFOP00000017860	ENSPFOP00000016414	ArfGAP with dual PH domains 1.	ADP-ribosylation factor GTPase activating protein 1.	0.706
ADAP1	arfgap2	ENSPFOP00000017860	ENSPFOP00000017889	ArfGAP with dual PH domains 1.	ADP-ribosylation factor GTPase activating protein 2.	0.567
ADAP1	arfgap3	ENSPFOP00000017860	ENSPFOP00000011577	ArfGAP with dual PH domains 1.	ADP-ribosylation factor GTPase activating protein 3.	0.567