(30 nodes) TRIAD supradomain network (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPFOP00000013194	RBR-type E3 ubiquitin transferase. (275 aa)
	rbck1	RanBP-type and C3HC4-type zinc finger containing 1. (512 aa)
	rnf31	Ring finger protein 31. (1111 aa)
	LOC103131859	RBR-type E3 ubiquitin transferase. (279 aa)
	rnf216	Ring finger protein 216. (1016 aa)
	LOC103135177	RBR-type E3 ubiquitin transferase. (839 aa)
	LOC103137006	RBR-type E3 ubiquitin transferase. (315 aa)
	LOC103137586	Uncharacterized protein. (280 aa)
	ankib1	RBR-type E3 ubiquitin transferase. (1107 aa)
	ENSPFOP00000013165	Uncharacterized protein. (259 aa)
	ENSPFOP00000012706	RBR-type E3 ubiquitin transferase. (922 aa)
	ENSPFOP00000000337	Uncharacterized protein. (275 aa)
	ENSPFOP00000021123	Uncharacterized protein. (273 aa)
	ENSPFOP00000011966	RBR-type E3 ubiquitin transferase. (305 aa)
	ENSPFOP00000011259	Si:dkey-181m9.8. (859 aa)
	rnf19a	RBR-type E3 ubiquitin transferase. (877 aa)
	rnf217	RBR-type E3 ubiquitin transferase. (584 aa)
	ENSPFOP00000009733	Uncharacterized protein. (273 aa)
	ENSPFOP00000009722	Uncharacterized protein. (247 aa)
	ENSPFOP00000006809	RBR-type E3 ubiquitin transferase. (501 aa)
	ENSPFOP00000006785	RBR-type E3 ubiquitin transferase. (446 aa)
	arih1	RBR-type E3 ubiquitin transferase. (528 aa)
	ENSPFOP00000005486	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (440 aa)
	ENSPFOP00000004112	RBR-type E3 ubiquitin transferase. (272 aa)
	LOC103135233	Sharpin and rbck1 related. (705 aa)
	ENSPFOP00000026837	RBR-type E3 ubiquitin transferase. (245 aa)
	ENSPFOP00000029509	Uncharacterized protein; Belongs to the cullin family. (2401 aa)
	LOC103138645	RBR-type E3 ubiquitin transferase. (642 aa)
	LOC103143442	RBR-type E3 ubiquitin transferase. (714 aa)
	LOC103155266	RBR-type E3 ubiquitin transferase. (425 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000337	ENSPFOP00000006809	ENSPFOP00000000337	ENSPFOP00000006809	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.623
ENSPFOP00000000337	ENSPFOP00000011259	ENSPFOP00000000337	ENSPFOP00000011259	Uncharacterized protein.	Si:dkey-181m9.8.	0.623
ENSPFOP00000000337	rnf216	ENSPFOP00000000337	ENSPFOP00000015244	Uncharacterized protein.	Ring finger protein 216.	0.623
ENSPFOP00000000337	rnf31	ENSPFOP00000000337	ENSPFOP00000001747	Uncharacterized protein.	Ring finger protein 31.	0.623
ENSPFOP00000004112	ENSPFOP00000006809	ENSPFOP00000004112	ENSPFOP00000006809	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.623
ENSPFOP00000004112	ENSPFOP00000011259	ENSPFOP00000004112	ENSPFOP00000011259	RBR-type E3 ubiquitin transferase.	Si:dkey-181m9.8.	0.623
ENSPFOP00000004112	rnf216	ENSPFOP00000004112	ENSPFOP00000015244	RBR-type E3 ubiquitin transferase.	Ring finger protein 216.	0.623
ENSPFOP00000004112	rnf31	ENSPFOP00000004112	ENSPFOP00000001747	RBR-type E3 ubiquitin transferase.	Ring finger protein 31.	0.623
ENSPFOP00000005486	arih1	ENSPFOP00000005486	ENSPFOP00000006748	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	RBR-type E3 ubiquitin transferase.	0.487
ENSPFOP00000005486	rnf217	ENSPFOP00000005486	ENSPFOP00000010453	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	RBR-type E3 ubiquitin transferase.	0.415
ENSPFOP00000006785	arih1	ENSPFOP00000006785	ENSPFOP00000006748	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.469
ENSPFOP00000006785	rnf216	ENSPFOP00000006785	ENSPFOP00000015244	RBR-type E3 ubiquitin transferase.	Ring finger protein 216.	0.492
ENSPFOP00000006785	rnf217	ENSPFOP00000006785	ENSPFOP00000010453	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.469
ENSPFOP00000006809	ENSPFOP00000000337	ENSPFOP00000006809	ENSPFOP00000000337	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.623
ENSPFOP00000006809	ENSPFOP00000004112	ENSPFOP00000006809	ENSPFOP00000004112	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.623
ENSPFOP00000006809	ENSPFOP00000009722	ENSPFOP00000006809	ENSPFOP00000009722	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.623
ENSPFOP00000006809	ENSPFOP00000009733	ENSPFOP00000006809	ENSPFOP00000009733	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.623
ENSPFOP00000006809	ENSPFOP00000011966	ENSPFOP00000006809	ENSPFOP00000011966	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.623
ENSPFOP00000006809	ENSPFOP00000012706	ENSPFOP00000006809	ENSPFOP00000012706	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.623
ENSPFOP00000006809	ENSPFOP00000013165	ENSPFOP00000006809	ENSPFOP00000013165	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.623