13 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	LOC103141413	Cyclin T2b; Belongs to the cyclin family. (597 aa)
	ENSPFOP00000013383	Elongin B. (118 aa)
	ENSPFOP00000012455	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (468 aa)
	ENSPFOP00000011898	RTF1 homolog, Paf1/RNA polymerase II complex component. (664 aa)
	ELOB	Elongin B. (119 aa)
	nelfa	Negative elongation factor complex member A. (547 aa)
	cdk9	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily. (393 aa)
	ENSPFOP00000004460	Uncharacterized protein. (1108 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (799 aa)
	nelfe	Negative elongation factor complex member E. (357 aa)
	ccnt2	Cyclin T2; Belongs to the cyclin family. (692 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELOB	ENSPFOP00000004460	ENSPFOP00000007353	ENSPFOP00000004460	Elongin B.	Uncharacterized protein.	0.631
ELOB	ENSPFOP00000013383	ENSPFOP00000007353	ENSPFOP00000013383	Elongin B.	Elongin B.	0.959
ELOB	LOC103141413	ENSPFOP00000007353	ENSPFOP00000015420	Elongin B.	Cyclin T2b; Belongs to the cyclin family.	0.613
ELOB	ccnt2	ENSPFOP00000007353	ENSPFOP00000000178	Elongin B.	Cyclin T2; Belongs to the cyclin family.	0.613
ELOB	cdk9	ENSPFOP00000007353	ENSPFOP00000005331	Elongin B.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.631
ELOB	nelfe	ENSPFOP00000007353	ENSPFOP00000002970	Elongin B.	Negative elongation factor complex member E.	0.760
ELOB	polr2f	ENSPFOP00000007353	ENSPFOP00000000126	Elongin B.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.675
ENSPFOP00000004460	ELOB	ENSPFOP00000004460	ENSPFOP00000007353	Uncharacterized protein.	Elongin B.	0.631
ENSPFOP00000004460	ENSPFOP00000013383	ENSPFOP00000004460	ENSPFOP00000013383	Uncharacterized protein.	Elongin B.	0.631
ENSPFOP00000004460	LOC103141413	ENSPFOP00000004460	ENSPFOP00000015420	Uncharacterized protein.	Cyclin T2b; Belongs to the cyclin family.	0.889
ENSPFOP00000004460	NCBP1	ENSPFOP00000004460	ENSPFOP00000004402	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.672
ENSPFOP00000004460	ccnt2	ENSPFOP00000004460	ENSPFOP00000000178	Uncharacterized protein.	Cyclin T2; Belongs to the cyclin family.	0.889
ENSPFOP00000004460	cdk9	ENSPFOP00000004460	ENSPFOP00000005331	Uncharacterized protein.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.970
ENSPFOP00000004460	nelfa	ENSPFOP00000004460	ENSPFOP00000007101	Uncharacterized protein.	Negative elongation factor complex member A.	0.633
ENSPFOP00000004460	nelfe	ENSPFOP00000004460	ENSPFOP00000002970	Uncharacterized protein.	Negative elongation factor complex member E.	0.709
ENSPFOP00000004460	polr2b	ENSPFOP00000004460	ENSPFOP00000017158	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.731
ENSPFOP00000004460	polr2f	ENSPFOP00000004460	ENSPFOP00000000126	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.745
ENSPFOP00000011898	polr2b	ENSPFOP00000011898	ENSPFOP00000017158	RTF1 homolog, Paf1/RNA polymerase II complex component.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.943
ENSPFOP00000011898	polr2f	ENSPFOP00000011898	ENSPFOP00000000126	RTF1 homolog, Paf1/RNA polymerase II complex component.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.918
ENSPFOP00000012455	LOC103141413	ENSPFOP00000012455	ENSPFOP00000015420	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Cyclin T2b; Belongs to the cyclin family.	0.613