37 items (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rae1	Ribonucleic acid export 1. (368 aa)
	LOC103132121	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family. (236 aa)
	ENSPFOP00000028952	Aly/REF export factor. (274 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (383 aa)
	nup43	Nucleoporin 43. (370 aa)
	nup155	Nucleoporin 155. (1367 aa)
	LOC103137354	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family. (215 aa)
	ENSPFOP00000018099	Nucleoporin 37. (327 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (902 aa)
	LOC103133395	RRM domain-containing protein. (243 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	nup210	Nucleoporin 210. (1880 aa)
	nup50	Nucleoporin 50. (449 aa)
	LOC103137288	Translocated promoter region b, nuclear basket protein. (2358 aa)
	ENSPFOP00000013288	Nucleoporin 153. (1456 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
	NUP62	Nucleoporin 62. (553 aa)
	nup133	Nucleoporin 133. (1116 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (656 aa)
	nup98	Nucleoporin 98. (1820 aa)
	ENSPFOP00000001377	POM121 transmembrane nucleoporin. (1138 aa)
	LOC103145252	Nucleoporin 42. (419 aa)
	LOC103147715	Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family. (210 aa)
	nup54	Uncharacterized protein. (566 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (799 aa)
	nup188	Nucleoporin 188. (1749 aa)
	tpr	Translocated promoter region a, nuclear basket protein. (2481 aa)
	nup160	Nucleoporin 160. (1396 aa)
	ranbp2	RAN binding protein 2. (3082 aa)
	nup58	Nucleoporin 58. (594 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (296 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	NUP214	Nucleoporin 214. (1694 aa)
	ndc1	NDC1 transmembrane nucleoporin. (669 aa)
	ENSPFOP00000010929	Nucleoporin 205. (2030 aa)
	nup88	Nucleoporin 88. (713 aa)
	AAAS	Aladin WD repeat nucleoporin. (370 aa)

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAAS	ENSPFOP00000010929	ENSPFOP00000000449	ENSPFOP00000010929	Aladin WD repeat nucleoporin.	Nucleoporin 205.	0.960
AAAS	ENSPFOP00000013288	ENSPFOP00000000449	ENSPFOP00000013288	Aladin WD repeat nucleoporin.	Nucleoporin 153.	0.826
AAAS	ENSPFOP00000018099	ENSPFOP00000000449	ENSPFOP00000018099	Aladin WD repeat nucleoporin.	Nucleoporin 37.	0.893
AAAS	ENSPFOP00000028952	ENSPFOP00000000449	ENSPFOP00000028952	Aladin WD repeat nucleoporin.	Aly/REF export factor.	0.622
AAAS	LOC103133395	ENSPFOP00000000449	ENSPFOP00000017180	Aladin WD repeat nucleoporin.	RRM domain-containing protein.	0.596
AAAS	LOC103137288	ENSPFOP00000000449	ENSPFOP00000014127	Aladin WD repeat nucleoporin.	Translocated promoter region b, nuclear basket protein.	0.742
AAAS	LOC103145252	ENSPFOP00000000449	ENSPFOP00000001529	Aladin WD repeat nucleoporin.	Nucleoporin 42.	0.832
AAAS	NUP214	ENSPFOP00000000449	ENSPFOP00000010841	Aladin WD repeat nucleoporin.	Nucleoporin 214.	0.922
AAAS	NUP62	ENSPFOP00000000449	ENSPFOP00000012658	Aladin WD repeat nucleoporin.	Nucleoporin 62.	0.859
AAAS	ndc1	ENSPFOP00000000449	ENSPFOP00000010847	Aladin WD repeat nucleoporin.	NDC1 transmembrane nucleoporin.	0.957
AAAS	nup107	ENSPFOP00000000449	ENSPFOP00000017381	Aladin WD repeat nucleoporin.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.966
AAAS	nup133	ENSPFOP00000000449	ENSPFOP00000012587	Aladin WD repeat nucleoporin.	Nucleoporin 133.	0.906
AAAS	nup155	ENSPFOP00000000449	ENSPFOP00000019937	Aladin WD repeat nucleoporin.	Nucleoporin 155.	0.964
AAAS	nup160	ENSPFOP00000000449	ENSPFOP00000006973	Aladin WD repeat nucleoporin.	Nucleoporin 160.	0.913
AAAS	nup188	ENSPFOP00000000449	ENSPFOP00000006039	Aladin WD repeat nucleoporin.	Nucleoporin 188.	0.948
AAAS	nup210	ENSPFOP00000000449	ENSPFOP00000015876	Aladin WD repeat nucleoporin.	Nucleoporin 210.	0.870
AAAS	nup35	ENSPFOP00000000449	ENSPFOP00000009995	Aladin WD repeat nucleoporin.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.931
AAAS	nup43	ENSPFOP00000000449	ENSPFOP00000022831	Aladin WD repeat nucleoporin.	Nucleoporin 43.	0.902
AAAS	nup50	ENSPFOP00000000449	ENSPFOP00000015656	Aladin WD repeat nucleoporin.	Nucleoporin 50.	0.768
AAAS	nup54	ENSPFOP00000000449	ENSPFOP00000004165	Aladin WD repeat nucleoporin.	Uncharacterized protein.	0.959